Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PA2G4P6
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chrX:116167719-116169268  UCSC
Strand -
Parental Sequence NM_001246483.1
Parental seq. overlap 1372 bp
Parental seq. overlap (%) 88.5%
Genomic Region Intergenic
Retrocopy Summary PA2G4P6, located on chrX:116167719-116169268, is a retrocopy of the parental gene PA2G4. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PA2G4
Full Name N/A
Also known as -
Coordinate chr12:33130845-33139391
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PA2G4P1
Bonobo Pan paniscus PA2G4P6
Gorilla Gorilla gorilla PA2G4P6
Orangutan Pongo abelii PA2G4P7
Gibbon Nomascus leucogenys PA2G4P6
Crab-eating macaque Macaca fascicularis PA2G4P5
Rhesus Macaca mulatta PA2G4P5
Golden snub-nosed monkey Rhinopithecus roxellana PA2G4P1
Marmoset Callithrix jacchus LOC100410842P3
Green monkey Chlorocebus sabaeus Without Homology
Baboon Papio anubis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PA2G4P6
ATCGAGGGGGTTCTGACCACAGCCTGCGGCTGGGAAGGGAGACAGGCGGCGGCTCAGAGAAAACGAGGCTGCAGTGATGGTGGTAGGAAGATGTCGGGCAAGGACAAGCAGCAGGAGCAAACTATCGCCAAGGGCCTGGTCGTGACCAAGTATAAGATGGGGGGGGCGACATCGCTAACCAGGTACTTCGGTCCTTGGTAGAAGCATCTAGCTCAGGTGTGTTGGTACTGAGCCTGTGTGAGAAAGATGATGCCATGATTATGGAAGAAATAGGGAAAATCTTCAAGAAAAAAATAGAAATGAAAAAAGGTATTGCTTTTCCCACCAGCATTTCAGTAAATAACTCTATATGTCACTTCTCCCCTTTGAAGAGCAACCAGGATTATATTCTCAAGGAAGGTGACTTGGTAAAAATTGACCTTGGGGTCCATGTGGATGGCTTCATCGCTAATGTAGCTCATACTTTTGTGGTTGATGTAGCTCAGGGGACCCAAGTAACAGGGAGGAAAGCAGATGTCATTAAGGCAATTCACCTTTGTGATGAAGCTGTCCTACGCCTGGTCAAACCTGGAAACCAGAACACACAAGTGACAGAAGCCCTGAACAAAGCTGCCCACTCACTTAACTGCACGCCAATAGAAGGTATGCTGTCACATCAGTTGAAGCAGCATGTCATCGATGGAGAAAAAACCATTATCCAGAATCTCACAGACCAGAAGAAGAAGGACCATGAAGAAGCGGAATTGGCGGTACATGAAGTATATGCTGTGGATGTTCTCGTCAGCTCAGGAGAGGGCAAGAGCAAGGATGCAGGACAGAGAACCACTATTTACAAATGAGACCCCTCTAAACAGCACGGACTGAAGATGAAAACTTCACATGCCTTCTTCAGTGAGGTGGAAAAGTGTTTTGATGCCATGCCGTTTACTTTAAGAGCATTTGAAGATGAGAAGAAGGCTCAGATTGGTGTGGTGAAGTGCACCAAACATGAACTGGTGCAAACTATTTAATGTTCTCTATGAGAAGGAAGGTGAATTTGTTGCCCAGTTTAAATGTATAGTTCTGCTGATGCCCGATGGCCTTATGCAGATAACCAGTGGTCCCTTCGAGCCTGACCTCTACAAGTCTGAGATGGAAGTCCAGGATGCAGAGCTAAAGGCTCTCCTCCAGAGTTCTGCAAGTCaGGCCTACAAGACTGCAGAGAAAGCCACCAGTGGGGAAACATTAGAAGAAAATGAAGCTGGGGACTGAGGTGGGTCCTATCTCCCCAGCTTGCTGCTCCTGCCTCATCCCCTTCCCACCACACCGCAGGCTCTGTGAAGTATAATTCTTCTTCTCCACCTAGGACCACCAGCAGAGCAGGGTCTCCCTGCCCCCATCCCAGTTCCCCAACCCACTCCCTTCCAACAACCAGCTCCAACTGACTCTGATCTTGGGAGGCAAGGCTTCCCAATCACAGAAGACT
>NM_001246483.1
ATCGAGGGGACTCTGACCACAACCTGTGGCTGGGAAGGGAGACAGAGGCGGCGGCGGCTCAGGGGAAACGAGGCTGCAGTGGTGGTAGTAGGAAGATGTCGGGCGAGGACGAGCAGCAGGAGCAAACTATCGCTGAGGACCTGGTCGTGACCAAGTATAAGATGGGGGGCGACATCGCCAACAgggtacttcggtccttggtggaagcatctagctcaggtgtgtcggtactgagcctgtgtgagaaaggtgatgccatgATTATGGAAGAAACAGGGAAAATCTTCAAGAAAGAAAAGGAAATGAAGAAAGGTATTGCTTTTCCCACCAGCATTTCGGTAAATAACTGTGTATGTCACTTCTCCCCTTTGAAGAGCGACCAGGATTATATTCTCAAGGAAGGTGACTTGGTAAAAATTGACCTTGGGGTCCATGTGGATGGCTTCATCGCTAATGTAGCTCATACTTTTGTGGTTGATGTAGCTCAGGGGACCCAAGTAACAGGGAGGAAAGCAGATGTTATTAAGGCAGCTCACCTTTGTGCTGAAGCTGCCCTACGCCTGGTCAAACCTGGAAATCAGAACACACAAGTGACAGAAGCCTGGAACAAAGTTGCCCACTCATTTAACTGCACGCCAATAGAAGGTATGCTGTCACACCAGTTGAAGCAGCATGTCATCGATGGAGAAAAAACCATTATCCAGAATCCCACAGACCAGCAGAAGAAGGACCATGAAAAAGCTGAATTTGAGGTACATGAAGTATATGCTGTGGATGTTCTCGTCAGCTCAGGAGAGGGCAAGGCCAAGGATGCAGGACAGAGAACCACTATTTACAAACGAGACCCCTCTAAACAGTATGGACTGAAAATGAAAACTTCACGTGCCTTCTTCAGTGAGGTGGAAAGGCGTTTTGATGCCATGCCGTTTACTTTAAGAGCATTTGAAGATGAGAAGAAGGCTCGGATGGGTGTGGTGGAGTGCGCCAAACATGAACTGCTGCAACCATTTAATGTTCTCTATGAGAAGGAGGGTGAATTTGTTGCCCAGTTTAAATTTACAGTTCTGCTCATGCCCAATGGCCCCATGCGGATAACCAGTGGTCCCTTCGAGCCTGACCTCTACAAGTCTGAGATGGAGGTCCAGGATGCAGAGCTAAAGGCCCTCCTCCAGAGTTCTGCAAGTCGAAAAACCCAGAAAAAGAAAAAAAAGAAGGCCTCCAAGACTGCAGAGAATGCCACCAGTGGGGAAACATTAGAAGAAAATGAAGCTGGGGACTGAGGTGGGTCCCATCTCCCCAGCTTGCTGCTCCTGCCTCATCCCCTTCCCACCAAACCCCAGACTCTGTGAAGTGCAGTTCTTCTCCACCTAGGACCGCCAGCAGAGCGGGGGGATCTCCCTGCCCCCACCCCAGTTCCCCAACCCACTCCCTTCCAACAACAACCAGCTCCAACTGACTCTGGTCTTGGGAGGTGAGGCTTCCCAACCACGGAAGACTACTTTAAATGAAAAAAAGAAATTGAATAATAAAATCAGGAGTCAAAA

Publications

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