Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name PGK1P2
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chrX:63449587-63451326  UCSC
Strand -
Parental Sequence NM_001135738.1
Parental seq. overlap 1654 bp
Parental seq. overlap (%) 92.8%
Genomic Region Intragenic (OPHN1)
Retrocopy Summary PGK1P2, located on chrX:63449587-63451326, is a retrocopy of the parental gene PGK1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PGK1
Full Name phosphoglycerate kinase 1
Also known as -
Coordinate chrX:73637242-73667774
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PGK1P1
Bonobo Pan paniscus PGK1P3
Gorilla Gorilla gorilla PGK1P3
Orangutan Pongo abelii PGK1P3
Gibbon Nomascus leucogenys PGK1P3
Green monkey Chlorocebus sabaeus PGK1P4
Crab-eating macaque Macaca fascicularis PGK1P5
Rhesus Macaca mulatta PGK1P5
Baboon Papio anubis PGK1P4
Golden snub-nosed monkey Rhinopithecus roxellana PGK1P4
Marmoset Callithrix jacchus PGK1P5
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PGK1P2
TCAGCAGCCGGCTCCCTTACTGTCTGAATCATCGACCTCTCTCCATTTCCAAAATGTCGCTTTCTAACAAGCTGACATTGGACAAACCGGACGTCAAAGGGCAGCGGGTCATTATGAGAGTGGACTTCAATGTTCCTGTGTAGAATAACCAGATAACAAACAACCAGAGGATTAAGGCTACTGTCTTAAGCATCAAATTCTGCTTGGACAATGGAGCCAAGTCAGTAGTCCTTATGAGCCACCTAGGCCAGCCTGATGGTGTCCCTATGCCTGACAATACTCCTTAGAGCCATTTGCTGTAGAATTCAAATCTCTGCTGGGCAAGGATGTTCTGTTCTTGAAAGACTGTGTAGGCCCAGAAGTGGAGAAAGCCTGTGCCAACCCAGCTGCTGGGTCTGTCATCCTGCTGGAGAACCTCCACTTTCATGTGGAAGAAGAAGGGAAGGGAAAACTCTGGGAACAAGGTTAAAGTGAGCCCGCCAAAATAGAAGCTTTCCGAGCTTCACTTTCCACGCTAGGGAATGTGTATGTCAATGGTGCTTTTGGCACTGCTCACAGAGCCCACAGCTCCATGGTAGGAGTCAGTCTGCCACAGAAGGCTGGTGGTTTTTTGATGAAGAAGGAGCTGAACTACTTTGTGAAGGTCTTGGAGAGCCCATAGCGACCCTTCCTGGCCATTCTGGGTGGAGCTAAATTTGCAGACAAGATCCACCTGATCAATAATATGCTGGACAAAGTCAATGAGATGATTATTGGTGGTGGAACGGCTTTTACCTTCCTTAAGGTGCTCAACAACATGGAGACTGGCACTTCTCTGTTTGATGAAGAGGGAGCCAAGATTGTCAAAGACCTAATGTCCCAAGCTGAGAAGAATGGTGTGAAGATTACCTTGCCTATTGACTTTGTCACTGCTGAGAAATTTGATGAGAATGCCAAGACTGGCCAAGCCACTGTGGCTTCTGGCATACCTGCTGGCTGAATGGGCTTGGACTGTGGTCCTGAAAGCAGCAAGAAGTATGCTGAGACTGTCACTTGGGCTAAGCAGATTGTGTGGAATGGTCCTGTGGGGGTATTTGAATGGGAAGCTTTTGCCCAGGGAACCAAAGCCCTCATGGACGAGGTGGTGAAAGCCACTTCTAGGGGCTGCACTACCATCATAGGTGGTGGAAACACTGCCACTTGTTGTGCCAAATGGAACACAGAGGATAAAATCAGACATGTGAGCACTAGGGGTGGTGCCAGTTTAGAGCTCCTGGACGGTAAAGTCCTTCCTGGGGTGGATGCTCTCGGCAATATTTAGTACTTTCCTGCCTTTTAGTTCCTGTGCACAGCCCCTAAGTCAACTTAGCATTTTCTGCATCTCCACTTGGCATTAGCTAAAACCTTCCATGTCAAGATTCAGCTAGTGGCCAAGAGATGCAGTGCCAGGAACCCTTAAACAGTTGCACAGCATCTCAGCTCATCTTTACTGCACCCTGGATTTGCCTACATTCTTCAAGATCCCATTTGAATTTCTTAGTGACTAAACCATTGTGCATTCTAGAATGCATATATGCATATTTTGCCTGTTAAAAAAAAAGTGAGCTGTGTTAGCTTAGTTCTCTTTTGATGTAGCTTATCCTGATTAGCTTTGTCACTGTTTCACTACTCAGCGTGGAAACAAGATGAAATTCCATTTGTAGGTAGGGAGACGAAATTGATGATCCATTAAATAAACAAGAAAAGTGTCCATTGAAACCA
>NM_001135738.1
TTCTGCAAGCCTCCGGAGCGGACGTCAGCAGTCGGCTCCCTCGTTGACCGAATCACCGACCTCTCTCCCCAGCTGTATTTCCAAAATGTCGCTTTCTAACAAGCTGACGCTGGACAAGCTGGACGTTAAAGGGAAGCGGGTCGTTATGAGAGTCGACTTCAATGTTCCTATGAAGAACAACCAGATAACAAACAACCAGAGGATTAAGGCTGCTGTCCCAAGCATCAAATTCTGCTTGGACAATGGAGCCAAGTCGGTAGTCCTTATGAGCCACCTAGGCCGGCCTGATGGTGTGCCCATGCCTGACAAGTACTCCTTAGAGCCAGTTGCTGTAGAACTCAAATCTCTGCTGGGCAAGGATGTTCTGTTCTTGAAGGACTGTGTAGGCCCAGAAGTGGAGAAAGCCTGTGCCAACCCAGCTGCTGGGTCTGTCATCCTGCTGGAGAACCTCCGCTTTCATGTGGAGGAAGAAGGGAAGGGAAAAGATGCTTCTGGGAACAAGGTTAAAGCCGAGCCAGCCAAAATAGAAGCTTTCCGAGCTTCACTTTCCAAGCTAGGGGATGTCTACGTCAATGATGCTTTTGGCACTGCTCACAGAGCCCACAGCTCCATGGTAGGAGTCAATCTGCCACAGAAGGCTGGTGGGTTTTTGATGAAGAAGGAGCTGAACTACTTTGCAAAGGCCTTGGAGAGCCCAGAGCGACCCTTCCTGGCCATCCTGGGCGGAGCTAAAGTTGCAGACAAGATCCAGCTCATCAATAATATGCTGGACAAAGTCAATGAGATGATTATTGGTGGTGGAATGGCTTTTACCTTCCTTAAGGTGCTCAACAACATGGAGATTGGCACTTCTCTGTTTGATGAAGAGGGAGCCAAGATTGTCAAAGACCTAATGTCCAAAGCTGAGAAGAATGGTGTGAAGATTACCTTGCCTGTTGACTTTGTCACTGCTGACAAGTTTGATGAGAATGCCAAGACTGGCCAAGCCACTGTGGCTTCTGGCATACCTGCTGGCTGGATGGGCTTGGACTGTGGTCCTGAAAGCAGCAAGAAGTATGCTGAGGCTGTCACTCGGGCTAAGCAGATTGTGTGGAATGGTCCTGTGGGGGTATTTGAATGGGAAGCTTTTGCCCGGGGAACCAAAGCTCTCATGGATGAGGTGGTGAAAGCCACTTCTAGGGGCTGCATCACCATCATAGGTGGTGGAGACACTGCCACTTGCTGTGCCAAATGGAACACGGAGGATAAAGTCAGCCATGTGAGCACTGGGGGTGGTGCCAGTTTGGAGCTCCTGGAAGGTAAAGTCCTTCCTGGGGTGGATGCTCTCAGCAATATTTAGTACTTTCCTGCCTTTTAGTTCCTGTGCACAGCCCCTAAGTCAACTTAGCATTTTCTGCATCTCCACTTGGCATTAGCTAAAACCTTCCATGTCAAGATTCAGCTAGTGGCCAAGAGATGCAGTGCCAGGAACCCTTAAACAGTTGCACAGCATCTCAGCTCATCTTTACTGCACCCTGGATTTGCCTACATTCTTCAAGATCCCATTTGAATTTCTTAGTGACTAAACCATTGTGCATTCTAGAGTGCATATATTTATATTTTGCCTGTTAAAAAGAAAGTGAGCAGTGTTAGCTTAGTTCTCTTTTGATGTAGGTTATTATGATTAGCTTTGTCACTGTTTCACTACTCAGCATGGAAACAAGATGAAATTCCATTTGTAGGTAGTGAGACAAAATTGATGATCCATTAAGTAAACAATAAAAGTGTCCATTGAAACCGTGA

Publications

PMID - Link Title