Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PHF5AP4
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr22). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr3:50038636-50039448  UCSC
Strand +
Parental Sequence XM_003317262.5
Parental seq. overlap 756 bp
Parental seq. overlap (%) 69.6%
Genomic Region Intragenic (IP6K1)
Retrocopy Summary PHF5AP4, located on chr3:50038636-50039448, is a retrocopy of the parental gene PHF5A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PHF5A
Full Name PHD finger protein 5A
Also known as -
Coordinate chr22:24290092-24299176
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PHF5AP1
Bonobo Pan paniscus PHF5AP4
Gorilla Gorilla gorilla PHF5AP4
Orangutan Pongo abelii PHF5AP3
Gibbon Nomascus leucogenys PHF5AP1
Green monkey Chlorocebus sabaeus PHF5AP4
Rhesus Macaca mulatta PHF5AP1
Baboon Papio anubis PHF5AP3
Golden snub-nosed monkey Rhinopithecus roxellana PHF5AP3
Crab-eating macaque Macaca fascicularis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PHF5AP4
AGCCGGCTTCATTGGGAACTATGGCTAAACATCATCCTGATTTGATCTTTTGCTGCAAGCCAGCTGGTGTTGTCATCGGAAGATTGTGTGAAAAATGTGACAGCAAGTGTGATTTGTGACTCCTTTGTGCGTCCCTGCACTATGGTGTGCTATGTGATGAGTGTAACTACGTATCTTAGCATGGGTGCTGTGTGATCTGTGGAGGCCCTGGGGTCTCTGGTGCCTATTACTGTAAGGAGTGCACCATCTAGGAGAAGGATAGAGATGGCTGCCCAAAGATTGTCAATTTGGGGAGCTCTAAGACAGACCTCTTCTATGAACACAAAAAATGCAGCTTCAAGAAGAGGTGATTGGTGGGTGGCCCCTTCCTCCCCACAACATCAAGCTGCTGCAGCGGCTAGAAAAGATGCCTGCTACTCCCGGCAGAAAGGGAGCAGAGCCCAGAGCATCACCAGGAGTGCCTGCTAGTGTACTGGCAGCTTACCAACCCTCCTCTCCCTTCACCCAGACATGTGGTAGGGATGGAAAAGGATTCTTCACAGAGCACTCTGGCACACTTTATTGGAGAAAAATTGATAGATTAGTTAATGGTTTTTCTTGAATTTGAGAAGCAAAGATCTGTTCTCCATATTGATATGTTCTCCCTCAACCAAGATCTTCTAAGAAATAATATTTTAGTCTTCTGCTTGAGGAGTTGACTGTGAAGCTACACCCAGTGAAAAACATGATCTTGCAGCAGCTCTGGTGGCAGCTGTCCTTGAAGAACCTTTGGTGTATGGTGGGAAGCTATCAGAACAAGAAATGTAGCCATTT
>XM_003317262.5
GACGTGGAGGCAGGAACAATGGGGGTTAAAGGTCGGACGGAAGTTCCCGAAGCTTCCGGTGGCCGGCTTAGTTAGGAGCTATGGCTAAACATCATCCTGATTTGATCTTTTGCCGCAAGCAGGCTGGTGTTGCCATCGGAAGACTGTGTGAAAAATGTGATGGCAAGTGTGTGATTTGTGACTCCTATGTGCGTCCCTGCACTCTGGTGCGCATATGTGATGAGTGTAACTATGGATCTTACCAGGGGCGCTGTGTGATCTGTGGAGGACCTGGGGTCTCTGATGCCTATTATTGTAAGGAGTGCACCATCCAGGAGAAGGACAGAGATGGCTGCCCAAAGATTGTCAATCTGGGGAGCTCTAAGACAGACCTCTTCTATGAACGCAAAAAATACGGCTTCAAGAAGAGGTGATTGGTGGGTGGCCCCTTCCTCCCCCCAACATCAGTCTGCTGCAGCTGCCAGAAAACATGCCTACTACTACCAGCAGAAAGGGAGCAGAGCCCAGAGCATCACCAGGAGTGCCTGCTAGTGTACTGGCAGCTTGCCACCCCCTCCTCTCCCTTCACCCAGACACGTGGTAGGGATGGAAAAGGATTCTTCACAGAGCACTCTGGCACACCATATCGGAGAAAAGTTGATAGATTAGTTAATGGTTTTTCTTGAATTCGAGAAGCAAAGATCTGTTCTCTATATTGGTATGTTCTCCCTCAACCAAGATCTTCTAAAAAGAAATAATATTTTAGTCTTCTGCTTGAGGAATTGACTGTGAAGCGACGCTCAGTGAAAAACATGTTCTTGCAGCAGGTCTGGTGGCAGCTGTCCTTGAGGAACCTTTGGTGTGTGGTGGGAAGCTATCAGAACAAGAAATGTAGGCATTTCCCGTTTTTTTGGGGGGGGGGGCAGGGCTCTGCCCTCTTGAAAGGCATTTACTTGTTTAACACTTGTCCAGCTACAGTGGGGTACAGTAGCTGGCTATTCACAGGCATCATCATAGCCCACTAGTCTCATATTATTTTCCTTTTGAGAAATTGGAAACTCTTTCTGTTGCTATTATATTAATAAAGTTGGTGTTTATTTTCTGGTA

Publications

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