Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PIGPP1
Plot displaying the genomic locations of a retrocopy (in chr2A) and its respective parental gene (in chr21). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr2A:62306356-62306625  UCSC
Strand +
Parental Sequence XM_009424296.2
Parental seq. overlap 223 bp
Parental seq. overlap (%) 31%
Genomic Region Intergenic
Retrocopy Summary PIGPP1, located on chr2A:62306356-62306625, is a retrocopy of the parental gene PIGP. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PIGP
Full Name phosphatidylinositol glycan anchor biosynthesis class P
Also known as -
Coordinate chr21:23630378-23638162
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PIGPP5
Bonobo Pan paniscus PIGPP1
Gorilla Gorilla gorilla PIGPP2
Orangutan Pongo abelii PIGPP1
Gibbon Nomascus leucogenys PIGPP5
Green monkey Chlorocebus sabaeus PIGPP2
Crab-eating macaque Macaca fascicularis PIGPP4
Rhesus Macaca mulatta PIGPP4
Baboon Papio anubis PIGPP3
Golden snub-nosed monkey Rhinopithecus roxellana PIGPP4
Marmoset Callithrix jacchus PIGPP4
Greater horseshoe bat Rhinolophus ferrumequinum PIGPP3
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PIGPP1
CAACCAATTGGCCTAACATATATTGGGCAGTTGCATTACCTGTCTTCCTCCTTATTACTGCAGTAATCAGCTATGCACACTTATTTGAAATTAGCATGATTAATAGCCCTCCACTTGACTCCATTCATACAATCACAGATAGCTGTGGTAAAAATCAGCAGCAGAAAAATACCAAGGAGAGGCTCTCTCAACATTAAGAGATATTCCTATTAGTGAAGTAAACTAAATATATTTTTCTTGTAGCCAAAGTACGTTATACCAAAAACTGAA
>XM_009424296.2
CGCCGTCGCGAGCCGCGGGATCACGCCCGCCCCCGCGCTCGCTGGCTCCCACCTGGGGAGGGGTCGTCGTGCGCCTGCGCCAGGATTGTCTAAAGCCCCAGGAAAAATGGTGGAAAATTCACCGTCGCCATTGCCAGAAAGAGCGATTTATGGCTTTGTCCTTTTCTTAAGCTCCCAATTTGGCTTCATACTTTACCTCGTGTGGGCCTTTATTCCTGAATCTTGGCTAAACTCTTTAGGTTTAACCTATTGGCCTCAAAAATATTGGGCAGTTGCATTACCTGTCTACCTCCTTATTGCTATAGTAATTGGCTACGTGCTCTTGTTTGGGATTAACATGATGAGTACCTCTCCACTCGACTCCATCCATACAATCACAGATAACTATGCAAAAAATCAACAGCAGAAGAAATACCAAGAGGAGGCCATTCCAGCCTTAAGAGATATTTCTATTAGTGAAGTAAACCAAATGTTCTTTCTTGCAGCCAAAGAACTTTACACCAAAAACTGAACTGTGTGTAACCATAGTAACACCAAGCACGTATTTATTTATAAGTTTTTGCCATTATAATTTTGACCATAAATTAATTTGACCATCTCTCTTATTAATAGAGAAGTAAAAAATGTAAGTTGACCTTCTCTTAGATTATGTTCAATGAATATTGTAAATGTTCAAGTATTGTTAATGAATAGAATAAATACAATATTGCATTCCCATA

Publications

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