Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name ATP5F1BP2
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chrX:52139200-52140823  UCSC
Strand -
Parental Sequence XM_024256647.1
Parental seq. overlap 1426 bp
Parental seq. overlap (%) 81.4%
Genomic Region Intergenic
Retrocopy Summary ATP5F1BP2, located on chrX:52139200-52140823, is a retrocopy of the parental gene ATP5F1B. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ATP5F1B
Full Name N/A
Also known as ATP5B
Coordinate chr12:54415883-54423972
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Green monkey Chlorocebus sabaeus ATP5BP2
Crab-eating macaque Macaca fascicularis ATP5BP3
Rhesus Macaca mulatta ATP5F1BP3
Baboon Papio anubis ATP5F1BP2
Golden snub-nosed monkey Rhinopithecus roxellana ATP5F1BP1
Marmoset Callithrix jacchus ATP5F1BP4
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Gibbon Nomascus leucogenys Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ATP5F1BP2
CTCCACCCGGACTCTGCCATGTTGAGTCTTGTGGGTCCTGTGCCTGCTGCCTCGGTCTCTAGGGCCTTGCGGGGACTCAGTCCTTCAGCATCGCTACCCTTAGCTCAGCTCTTACTGTGTGCCATTCTCACAGCAGTTCATCCTGCCAGGGACGATGCAGTACAAACATCTCCTTTGTTGAAGGCAGATGCTCTCACCGGGTGCATCATGGAAGTCATCAATGCAGTGGTGGATGTGCAGTTTGATGGGATATCCTAAATGCCCTGGAAGTGCAAGGCAGGGAGACCAGGATGATTTTGGAGGTGGCCCAGCATTTGGGTGAGAGCACAGTAAGGACCATTGCTGTGGGTGGTACAGAAGGCTTGGTTAGAGGCCAGAAAGTCCTGGATTCTGGTGCACCAATCAAAATTCCTGTTGGTCCTGAGACTTCGGGCAGAATCATGAATGTCATTAAGGAGCCTGATGAAAGAGATCCCATCAAAACCAAACAGTTTGCTCCCATTCATGCTGAGGCTCCTGAGTTCATGGAAATGAGTGTTGAGCAGGAAATTCTGGTGACTGATATCAAGGTCGTGGATCTACTAGCTCCCTATGCCAAGGGTGGCAAAATTTGACTTTTTGGTGGTGCTGTAGTTGGCAAGACTATAGTGATCATGGAATTAGTAGTCAATGTCGCCAAAGCCCATGGTGGTTACTTGGTGTTTGCTGGTGTTGGTGACAGGACCCGTGAGGGCAATGATTTATTCTGTGATCTGATGTTAACAACTTAAAACATGCCACCTCCAAGGTAGTGCTGGTATATCTCAAATGATTGAACCACCTGGTGTTCATGCCCAGGTAGCTCTGACTGGACTGATTGTGGTTGAATACTTCACAGATCAAGAAGGTCAAGATGTACTGCTATTTATTGATAACATCTTTTGCTTCACCCAGGCTGGTGCAGAGGTGTCTGCCTTATCAGGCAGAATCCATTCTGCTGTGGGCTATCAGCCTACCCTGACCACTGACATGAGTACTATGCAGGAAATAATTACCACCACCAAGAAGGGATCTATCACCTCTGTACAGGTTATCTATGTGCCTCCTGATGACCTGACTGACCCTGCCCTTGCTACTACTTTTGCCCTTTTGGATGCTACCACTGTGTTATCCCATGTCATTGCTAAGCTGGGCATCTATCCAACTGTGGATCCTCTAGACTCCACCTCTTGTATCATAGATCCCAACATTGTTGGCGATGAGCATTATGATGTGACCCATGGGGTGCAAAAGATCCCGCAGGACTACAAATCCGTCCAAGGCATCATTGCCATCCTGGGTATGGATGAACTTTCTCAGGATGACAAGTTGACCATGTCCTGTGCGCAGAAAATAGTGTTACTTGTCTCAGCTATTCCAGGTCGTTGAAGTCTTTACAAGTCATATGAGGAAGCTGGTACCCCTGAAGGATACCATCAAAGGATTCTAGCAGATTTTGCCAGGTGAATATGACCATCTCACAGAACAGGCCTTCTATATGGTGGGACCCATTGAAGAAGCTGTGGCAAAAGCTAGCTGGAGGCCATTCATTGTGAGGGgCTAATCCAAAAAG
>XM_024256647.1
CAGCCAATTCACCCAATGGACCTGCCTACTGCAGCGTAGGCCTCGCCTCAACTGCAGGAGAGCAGGCGGCTACGGTTGCCGCAGCCTTCAGTCTCCACCCGGACTACGCCATGTTGGGGCTTGTGGGTCGGGTGGCCGCTGCTTCGGCCTCCGGGGCCTTGAGAGGACTCACCCCTTCAGCGTCGCTGCCCCCAGGTCAGCTCTTACTGCGGGCCGCTCCGACGGTGGTCCATCCTGTCAGGGACTATGCGGTGCAAACATCTCCTTCGCCAAAAGCAGGCGCCGCCACCGGGCGCATCGTGGCTGTCATTGGCGCAGTGGTGGACGTCCAGTTTGATGAGGGGCTACCACCAATTCTAAATGCCCTGGAAGTGCAAGGCAGGGAGACCAGACTGGTTTTGGAGGTGGCCCAGCATTTGGGTGAGAGCACAGTAAGGACTATTGCTATGGATGGTACAGAAGGCTTGGTTAGAGGCCAGAAAGTACTGGATTCTGGTGCACCAATCAAAATTCCTGTTGGTCCTGAGACTTTGGGCAGAATCATGAATGTCATTGGAGAACCTATTGATGAAAGAGGTCCCATCAAAACCAAACAATTTGCTCCCATTCATGCTGAGGCTCCAGAGTTCATGGAAATGAGTGTTGAGCAGGAAATTCTGGTGACTGGTATCAAGGTTGTGGATCTGCTAGCTCCCTATGCCAAGGGTGGCAAAATTGGGCTTTTTGGTGGTGCTGGAGTTGGCAAGACTGTACTGATCATGGAGTTAATCAACAATGTCGCCAAAGCCCATGGTGGTTACTCTGTGTTTGCTGGTGTTGGTGAGAGGACCCGTGAAGGCAATGATTTATACCATGAAATGATTGAATCTGGTGTTATCAACTTAAAAGATGCCACCTCTAAGGTAGCGCTGGTATATGGTCAAATGAATGAACCACCTGGTGCTCGTGCCCGGGTAGCTCTGACTGGACTGACTGTGGCTGAATACTTCAGAGACCAAGAAGGTCAAGATGTACTGCTATTTATTGATAACATCTTTCGCTTCACCCAGGCTGGTTCAGAGGTGTCTGCATTATTGGGCCGAATCCCTTCTGCTGTGGGCTATCAGCCTACCCTGGCCACTGACATGGGTACTATGCAGGAAAGAATTACCACTACCAAGAAGGGATCTATCACCTCTGTACAGGCTATCTATGTGCCTGCTGATGACTTGACTGACCCTGCCCCTGCTACTACGTTTGCCCATTTGGATGCTACCACTGTACTGTCGCGTGCCATTGCTGAGCTGGGCATCTATCCAGCTGTGGATCCTCTAGACTCCACCTCTCGTATCATGGATCCCAACATTGTTGGCAGTGAGCATTACGATGTTGCCCGTGGGGTGCAAAAGATCCTGCAGGACTACAAATCCCTCCAAGATATCATTGCCATCCTGGGTATGGATGAACTTTCTGAGGAAGACAAGTTGACCGTGTCCCGTGCACGGAAAATACAGCGTTTCTTGTCTCAGCCATTCCAGGTTGCTGAGGTCTTCACAGGTCATATGGGGAAGCTGGTACCCCTGAAGGAGACCATCAAAGGATTCCAGCAGATTTTGGCAGGTGAATATGACCATCTCCCAGAACAGGCCTTCTATATGGTGGGACCCATTGAAGAAGCTGTGGCAAAAGCTGATAAGCTGGCTGAAGAGCATTCATAGTGAGGGGTCTTTGTCCTCTGTACTGTCCCTCTCCTTGCCCCTAACCCAAAAA

Publications

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