Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name R3HCC1LP1
Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr10). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr12:52530295-52530603  UCSC
Strand -
Parental Sequence XM_016919055.2
Parental seq. overlap 258 bp
Parental seq. overlap (%) 6.8%
Genomic Region Intergenic
Retrocopy Summary R3HCC1LP1, located on chr12:52530295-52530603, is a retrocopy of the parental gene R3HCC1L. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name R3HCC1L
Full Name R3H domain and coiled-coil containing 1 like
Also known as -
Coordinate chr10:93988010-94098468
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens R3HCC1LP1
Bonobo Pan paniscus R3HCC1LP1
Gorilla Gorilla gorilla R3HCC1LP1
Orangutan Pongo abelii R3HCC1LP1
Gibbon Nomascus leucogenys R3HCC1LP1
Green monkey Chlorocebus sabaeus R3HCC1LP1
Crab-eating macaque Macaca fascicularis R3HCC1LP1
Rhesus Macaca mulatta R3HCC1LP1
Baboon Papio anubis R3HCC1LP1
Golden snub-nosed monkey Rhinopithecus roxellana R3HCC1LP1
Marmoset Callithrix jacchus R3HCC1LP1
Mouse lemur Microcebus murinus R3HCC1LP1
Horse Equus caballus R3HCC1LP1
Pale spear-nosed bat Phyllostomus discolor R3HCC1LP1
Greater horseshoe bat Rhinolophus ferrumequinum R3HCC1LP1
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>R3HCC1LP1
CCTTGCCACAGGCCACAAGACCAGCCAAGACCAAAGCCAGAGCTTATGCTATTTCCTCCAGCCAACAAAGGAACATCCTGAGGCTTCAGTAACCCTAGTCCGAAGGCTAGTTATCAGTGTTCTTGGGGTTCAAAGTAAGTAAATGAAACAGAGCTGGAAGTAGAGCTCAAGAAAATGCAAGAAGCCTGAGAGAACAAATAGTTGGAAGCCAAGTAATGGGAAGACATATCTGAAGGCAGAGATCAATCTGTTGTTTTAACATCACTCAATGAAAGGTATAGTTCATAAAATCAGGAGATGTTTCCATAA
>XM_016919055.2
CCCGTATCCCCTCCCTCTGTACCCCAAGCTAGGATTTTTAATCCCCACTTCTCCCTTCACAGCCCGGGACAAGACTTCCATTCCGTCGTTTGTTGCTGGTATTTTTTTTTCCTCATGTGACGCGAGGGGCCGCCCCCTGCCTGGGGCGGAGGTTACTGGGAAGCTCCCGCCTTCTGACCCCTGCGGGCCCGCGGTTGAGAGGGACCCTCCCGGGGCTCTTTTGCACTCACTGGGGCACGTGCTCGCTTTGGGCGCTCGCCCCAAATGATCCTGGCGGAAAGGACGTGCTTTTTCTGGGTTTCAACAGcatggtggtggctgttttctaagagtgagcatctggagagaaccaggtggaaactgcattactttttgtgaccaagccttagaagttctgtagtatcacaagcttgccagattcaaggagagagtgacagttacatgggatctgcttctcacaggagtgtcagagtcacgagacggagttttgccatgttgtccaggctggtgtcgaaatcctgagctcaagtggtctgcctgcctcggcttcccaaagtgctgggattacagGTGAGGCTGCTGTCAGAAAGGAACTTTTACACAGTTTGCCTTCAGAGACAGTCTATCGGCATGTTGTAGAGTTTTATTACTAAGAAAATAAATGTTACTTATATGATTGTGGTGGTGCCATGCAGCAAGAATCAGAGAGATGCAGAGTTAGAGCCAGAAGGCCTGACATGGCACTTTATGTACCTAAAGCTCGTAGGGGTGCAGTACTCCTTAAGACAGGTGATGAAGAAGAAAGCTGTGGTTCACCTAACTCTGTGGTGAAAGAAAAGCAAAAAGAAAGTTCTCTCTCCCAAAAAGAAGTCTTTAAAGACAAACCGGAGGCTCGAAGACTAAGTATCAATCCTGATAGAAAGGAGCATAATTGTAGAGAAGGAAAGAAATCTTCAACAAAATTAAGAATGGACACATGCCTTCAAAAAACAAATAGAGTTTGTTCTAAGAGAGGAACCACTGAATCCAAAGAAGTATTATCCCAAGGACAACAGCAGGGAGCCCCAGATGCTGGGGTTATAACTAATGCACCTTTACAGAGACATTTTAAACCAAAGAAGGTGGAGTGTTTGGAAGTTGAAACTACGGATGTGACAGGACATGAGAGGATACTTCTTTCACAGGCCTGTTTAGGAATCAGCGAGGCTCAAGTTCCAAGCAAACCATTCCAAAATGTGGAATTCTGTGACTTCAGTAGGCATGAACCTGATGGGGAAGCATTTGAAGACAAAGATTTGGAAGGCAGAATTGAAACTGATACCAAGGTTTTGGAGATACTATATGAGTTTCCTAGAGTTTTTAGTTCTGTCATGAAACCTGAGAATATGATTGTACCAATAAAACTAAGCTCTGATTCTGAAATTGTACAACAAAGTATGCAAACATCAGATGGAATATTGAATCCCAGCAGCGGAGGCATCACCACTACTTCTGTTCCTGGAAGTCCAGATGGTGTCTTTGATCAAACTTGCGTAGATTTTGAAGTTGAGAATGTAGGTGGTATAGCCAATAGTACAGGTTTCATCTTAGATCAAAAAGATACAGATTCCATTCCTGTAACTATGGGTCACATCTCTCTGTCAGAGAGCACAAATGACACTGTTAGTCCGGTAATGATTAGAGAATGTGAGAAGAATGACAGCACTGCTGATGAGTTACATGTAAAGCACGAACCTCCTGATACAGCTGTCCTTGCTCATGAAACACATAGAGATAGTGGATTTAAGAATGTAGGTGACATTACCAATAAAGCATGTATGATGGACACTACAGGTATGTCCTGTAGTGATCATGTAACTGTTGATAGCCCTTATGTAGTTGCAGTTAGAATAGCTGATGAGACCTCTATTAATACACGAAGTTTCTCAAAGTTTGTAGGAATGAGTGCAGATGCAACCCCTCTTCATGCAGCTAGAAGTGGGAATGACACTGAAGATTTCAGCAACCCTTCTGCTTGCTCAGATATTTATGCTGAGAGTATTTCATCTCATTTTACAGAGTCAACAGGAAAGTTGATAGAGAGCTTGTCAGATTGTGCTTCCTCCTTACCTATAAAAAAGATTGCTGGTAGTAATTATAACACTTTTTTGGACTCTGAACTCAGTATGTTAAATGGGACAAAAGTTCTTTCAGACAGTGCCGTGGGCATTGACCTGGGTAGTACTGGTGATACAACAGAAGCATTGCACGAACTAAGAACTGCCGAAGAGTTCAAAACAAAAGAGCAAGATGACTCAGGGAATATAGAATTTGGTGTATCTTTTCCTGATAGGGAATCATTATCTATGGAAACATCCATCGAACCAAAAGCAACTGAAACTTCTCACACAGAGGGAATTACTGCCACTGAGGAGAGCTGGGAGTCTATGTTTAACGATGATGGTGACTGCCTGGATCCACGTCTTCTACAAGAGgggattctgatgcacataaagccagagaaccactgCTCAAAGTTATCAGGGAATACCAAGAGCAGAGAGAGCATCCAGGAACCTGGATTTGATTACTACAATCATGAAGTTCCTGATATTGACCTCAGTGATTGTGAATTCCCACATGTCATTGAAATTTATGACTTTCCCCAAGAATTTCGTACTGAAGACCTTCTACGGGTTTTCTGCAGTTATCAAAAGAAAGGATTTGATATTAAATGGGTGGATGATACACATGCCCTAGGAGTATTCTCCAGTCCAATTACAGCTCGTGATGCGTTGGGTATTAAACACACCATGGTGAAGATTCGTCCCTTGTCACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCTTATGCTGAGTTCCTCCAGCCAGCAAAGGAGCGTCCTGAGACTTCAGCAGCCCTAGCCAGAAGGTTAGTCATCAGTGCCCTTGGGGTTCGAAGTAAGCAGAGCAAAACCGAACGAGAAGCAGAGCTCAAGAAACTGCAAGAAGCCAGAGAGAGAAAGCGGTTGGAAGCCAAGCAACGGGAAGACATCTGGGAAGGCAGAGACCAGTCTACAGTTTGAACATCACTCAATGAAAGGGATAATTCCATGAATCAGAAAATGTTTCCATAGCCTTCAGATAAGATGATCCTTCCAGAGCTCTATGTACATGCAGATGTGCATGTTAAAGAGATAAAGTGATCGAGACAAGGACTGACTGGGTATAGAAGGAAGACAGACTCCTGTCTTCACTCCTAAATGCAGTTCTTTGGAATCACCCTACTGTGGTGGGCGTAGTAGGGAGCCATCAGCCAGGAAGAAACGTGGGAGATGTGAATTCCAAGAGTTCCCTGGACAGGGCAAGTCATGTTAGCGTGGGTCACACTTCCAAGATATTTAAAGCAAATACAAAACAGAACAGAGGATTCAAACCGCAAGTATGGGAGATTTAGGCCCTGCAGAGGCAGACCATTCCTTAGTATCTCACAAAGCAGAGTAATACTGGAGGCAGAGTAGGGGGTGGGTAGAGAGCAGTTAGTACAAAGAGGCAGAACAGTGTCTGGTTTACTTGGCATACACAGAATCTGCACTGCCAGTTCCAGAACTCCGAAGTTGGTGAACTACAGGAGATGTGGGTATTTAGACTCCAAAGTTTATACTGAGCTCAGTGCCTGGGACCACTCCAGCTGCACTGCAGCCAGGGGGGATACCAGCTTCATTCCTCAGAGTAAACCAACCTTGGGAGCTGTGTGCCAGTCCCAGTGTAAGCAGTAATACCATGTTGTAAGAGGGAACATTAAAGCCCATTTTATGACATATA

Publications

PMID - Link Title