Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name H3F3AP12
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr3:134532996-134534490  UCSC
Strand +
Parental Sequence XM_005541007.1
Parental seq. overlap 716 bp
Parental seq. overlap (%) 62.7%
Genomic Region Intragenic (RSBN1L)
Retrocopy Summary H3F3AP12, located on chr3:134532996-134534490, is a retrocopy of the parental gene LOC102146338. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC102146338
Full Name N/A
Also known as H3F3A
Coordinate chr1:84877109-84888220
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes HIST1H3AP20
Bonobo Pan paniscus LOC100970414P13
Gorilla Gorilla gorilla LOC101132116P16
Orangutan Pongo abelii LOC100433071P16
Gibbon Nomascus leucogenys LOC100599068P19
Green monkey Chlorocebus sabaeus H3F3AP9
Rhesus Macaca mulatta LOC699443P8
Golden snub-nosed monkey Rhinopithecus roxellana LOC104677083P10
Human Homo sapiens Without Homology
Baboon Papio anubis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>H3F3AP12
TTTTCAATTGTGTTTGCAGCCACCGCCACACCACTGTCTCTCTCTAAGGCCGGCACCACCTCTAGCTCACTGAGCTCCAGCCTAAGGAGAAGGTGGGTAAGTAAGGAGGCCTCTATACCATAGTTCCTACAAAGCTGACTGCCCGCAAATCGACCAGTGTGGTAAAGCAGCCAGGAGGTCGCTCACAAGAGTGTGCCCTCTACTGGAAGGGTAAAGACACATCATCATCACAGGCCTGGTATTACGTGAAATTACACGTTACCAGAAGTCCACCGAACAACTGATTCACAAACTTCCCTTCCGGCGACTAGTGCAACAGATTGCTCAGGGCTTTAAAACAGATCTGCGCTTCCAGAGCACAGTTATTGGTGCTTTGCAGGAGGCAAGTGAGGCTTAACTGGTTGGCCTTTTTTGAAGACACCTACCTGTGTGCTATCCATGCAAAACATGTAACAATTATGCCAAAAGCCATTTATGCCAAAAGACATCCAGCTAGCACACCACTAATACGTGGAtTGGTGGGGAATATGCTCAAGAATCCAGTATGATGGCAAACATTTCATTCTCCCAAAAGAAAAAAATTATCTTCTTCCCATTACTGGTAGTTCTGAATGTTAGATTTTTTTCCCCACCATGGGGTCAAAAGGTGCCTAAGTATGTGATTGTGAATGGAAAAACAGGTGACCGAAATCAGGTAATGGCAGTTTTTCCATGTTCATTTGTGTGTGAATTTTTAATATAAATGCAGGGATGTAAAGCATTAATGCAAGTCAAAATGTTTCAGTGAACGAGTTTCAGCAGTTCAACTTTATAATTATAAAGAAACCTGTTAAATTTTT
>XM_005541007.1
GCGGCGCGGGGGCGGGGCGGCGTGTGTTGGGGGATAGCCTCGGTGTCAGCCATCTTTCAATTGTGTTcgcagccgccgccgcgccgccgtcgctctctaacgccagcgccgcctctcgctcgccgAGCTACAGCCGAAGGAGAAGGGGGGTAAGTAAGGAGGTCTCTGTACCATGGCTCGTACAAAGCAGACTGCCCGCAAATCGACCGGTGGTAAAGCACCCAGGAAGCAACTGGCTACAAAAGCCGCTCGCAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATCGTTACAGGCCTGGTACTGTGGCACTCCGTGAAATTAGACGTTATCAGAAGTCCACTGAACTTCTGATTCGCAAACTTCCCTTCCAGCGTCTGGTGCGAGAAATTGCTCAGGACTTTAAAACAGATCTGCGCTTCCAGAGCGCAGCTATTGGTGCTTTGCAGGAGGCAAGTGAGGCCTATCTGGTTGGCCTTTTTGAAGACACCAACCTGTGTGCTATCCATGCCAAACGTGTAACAATTATGCCAAAAGACATCCAGCTAGCACGCCGCATACGTGGAGAACGTGCTTAAGAATCCACTATGATGGGAAACATTTCATTCTCaaaaaaaaaaaaaaaaaaaaaaaTTCTCTTCTTCCTGTTATTGGTAGTTCTGAACGTTAGATTTTTTTTTTCCATGGGGTCAAAAGGTACCTAAGTATATGATTGCGAGTGGAAAAATAGGGGACAGAAATCAGGTATTGGCAGTTTTTCCATTTTCATTTGTGTGTGAATTTTTAATATAAATGCAGAGGCGTAAAGCATTAATGCAAGTTAAAATGTTTCAGTGAACAAGTTTCAGCGGTTCAACTTTATAATAATTATAAATAAACCTGTTAAATTTTTCTGGACAATGCCAGCATTTGGATTTTTTTAAAACAAGTAAATTTCTTATTGACGGCAACTAAATGGTGTTTGTAGCATTTTTATCATACAGTAGATTCCATCCATTCACTATACTTTTCTAACTGAGTTGTCCTACATGCAAGTACATGTTTTTAATGTTGTCTGTCTTCTGTGCTGTTCCTGTAAGTTTGCTATTAAAATACATTAAACTATA

Publications

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