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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL17P28
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr18). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr8:41926682-41926899  UCSC
Strand +
Parental Sequence XM_024350840.1
Parental seq. overlap 176 bp
Parental seq. overlap (%) 28.3%
Genomic Region Intergenic
Retrocopy Summary RPL17P28, located on chr8:41926682-41926899, is a retrocopy of the parental gene RPL17. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL17
Full Name ribosomal protein L17
Also known as -
Coordinate chr18:43728077-43732132
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Bonobo Pan paniscus RPL17P29
Gorilla Gorilla gorilla RPL17P31
Orangutan Pongo abelii LOC103892985P23
Baboon Papio anubis RPL17P28
Marmoset Callithrix jacchus NDUFB7P2
Panda Ailuropoda melanoleuca RPL17P50
Cat Felis catus RPL17P17
Human Homo sapiens Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL17P28
ATCCAATCTTTGTGTTCACTTCAGGAATACCAGTGAAACTGCCCAAGCCACCAAGGCTTTACCTATACCAAAAGCTACCCAGTATCTGAAAGATGCCACAATACAGAAGCAATGTGTGCCATGCTGCCTTACCATGGTGGAGTTGACAGCAGTGCCCAGGCCAGACCGTGGGGGTAATGCAGGGTCAGTGGCCCAAAAAGAGTGATGAATTATTGCTG
>XM_024350840.1
CAAAGGGTTGACTGGATTGGTAATCTGTGAAAATGGTTCGCTATTCACTTGACCCGGAGAACCCCACGAAATCATGCAAATCAAGAGGTTCCAATCTTCGTGTTCACTTCAAGAACACTCGTGAAACTGCTCAGGCCATCAAGGGTATGCATATACGAAAAGCCACGAAGTATCTGAAAGATGTCACTTTACAGAAACAGTGTGTACCATTCCGACGTTACAATGGTGGAGTTGGCAGGTGTGCGCAGGCCAAGCAGTGGGGCTGGACACAAGGTCGGTGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAACGCAGAGAGTAATGCTGAACTTAAGGGTTTAGATGTAGATTCTCTGGTCATTGAGCATATCCAAGTGAACAAAGCACCTAAGATGCGCCGCCGGACTTACAGAGCTCATGGTCGGATTAACCCATACATGAGCTCTCCCTGCCACATTGAGATGATCCTTACGGAAAAGGAACAGATTGTTCCTAAACCAGAAGAGGAGGTTGCCCAGAAGAAAAAGATATCCCAGAAGAAACTGAAGAAACAAAAACTTATGGCACGGGAGTAAATTCAGCATTAAAATAAATGTAATTAAAAGGAAAA

Publications

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