Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL5P21
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr10:13233658-13234487  UCSC
Strand -
Parental Sequence XM_003308214.4
Parental seq. overlap 770 bp
Parental seq. overlap (%) 70.5%
Genomic Region Intragenic (CCDC3)
Retrocopy Summary RPL5P21, located on chr10:13233658-13234487, is a retrocopy of the parental gene RPL5. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL5
Full Name ribosomal protein L5
Also known as -
Coordinate chr1:91650639-91660594
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL5P25
Bonobo Pan paniscus RPL5P22
Gorilla Gorilla gorilla RPL5P20
Orangutan Pongo abelii RPL5P22
Gibbon Nomascus leucogenys RPL5P19
Green monkey Chlorocebus sabaeus RPL5P19
Crab-eating macaque Macaca fascicularis RPL5P22
Rhesus Macaca mulatta RPL5P22
Baboon Papio anubis RPL5P25
Golden snub-nosed monkey Rhinopithecus roxellana RPL5P1
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL5P21
GGCCTGCAGGTCTCTGTCGAGCCACAGATGCAGGTCTCTGTTCCACAGGGTGGGGTTTGTTAAAGTTGTTAAAAATAAGGCCTACTTTAAGAGATACCAAGTGACATTTAGAAGACGATGAGAGGGTAAAACGGATTACTATGCCCAGAAACGCTTGGTGATGCAGGATAAAAATAAATACAGCACACCCAAATACAGGATGATAGTTCGTGTAACGAACAGAGATATCATTTGTCAGATTGCTTAGGCCGTATTGAGGGGGATATGATAGTCTGCGTGGCATATGCACACGAACTGCCAAAATACGGTGTGAAGGTTGGCCTGACAAATTACGCTGCTGAGTATTGTCCTGGACTGCTGCTGACCCGCAGGCTTCTCAGTAGGTTTGGCATGGACAAGATCTATGAAGGCCAAGTGAAGGTGACTGGCGATGAATACGATGTGGAAAGCATTGATGGTCAGCCAGGTGCCTTTACCTGCTATTTGGATGCAGGCCTTGCCAGAACTACCGCTGGCAATCAAGTTTTTGGCACCCTGAAGGGAGCTGTGGATGGAGGCTTGTCTATCCCTCACAATACCAAGTGATTCCCCGGTTATAATTCTGAAAACAAGGAATTTATTGCAGAAGTACACCAGAAGCACATCAGGGGCCAGAATGTTGCAGATTACATGTGCTACTTAATGGAGGAAGATGAAGATGCTTACAAGAAACAGTTCTTTCAATATATAAAGAACAATGTAACTCCAGACATGATGGAGGAGATATACAAGAAAGCTCATGCTGCTATACGAGAGAATCCAGTCTATGAAAAGAAGCCCAAGAAAGAAGG
>XM_003308214.4
TCTCTTCCACACGTCACTGGCGTGACCGTCCGCGCTACATACTGCGCCTGCGCAAGGGCTGTGGCCCTTTTCCCACCCCCTAGCGCCGCTGGGCCTGCAGGTCTCTGTCGAGCCGCGGACGCCAGTCTCTGTTCCGCAGGATGGGGTTTGTTAAAGTTGTTAAGAATAAGGCCTACTTTAAGAGATACCAAGTGAAATTTAGAAGACGACGAGAGGGTAAAACTGATTATTATGCTCGGAAACGCTTGGTGATACAAGATAAAAATAAATACAACACACCCAAATACAGGATGATAGTTCGTGTAACAAACAGAGATATCATTTGTCAGATTGCTTATGCCCGTATAGAGGGGGATATGATAGTCTGCGCAGCGTATGCACACGAACTGCCAAAATATGGTGTGAAGGTTGGCCTGACAAATTATGCTGCAGCATATTGTACTGGCCTGCTGCTGGCCCGCAGGCTTCTCAATAGGTTTGGCATGGACAAGATCTATGAAGGCCAAGTGGAGGTGACTGGTGATGAATACAATGTGGAAAGCATTGATGGTCAGCCAGGTGCCTTCACCTGCTATTTGGATGCGGGCCTTGCCAGAACTACCACTGGCAATAAAGTTTTTGGTGCCCTGAAGGGAGCTGTGGATGGAGGCTTGTCTATCCCTCACAGTACCAAACGATTCCCTGGTTATGATTCTGAAAGCAAGGAATTTAATGCAGAAGTACATCGGAAGCACATCATGGGCCAGAATGTTGCAGATTACATGCGCTACTTAATGGAAGAAGATGAAGATGCTTACAAGAAACAGTTCTCTCAATACATAAAGAACAGCGTAACTCCAGACATGATGGAGGAGATGTATAAGAAAGCTCATGCTGCTATACGAGAGAATCCAGTCTATGAAAAGAAGCCCAAGAAAGAAGTTAAAAAGAAGAGGTGGAACCGTCCCAAAATGTCCCTTGCTCAGAAGAAGGATCGGGTAGCTCAAAAGAAGGCAAGCTTCCTCAGAGCTCAGGAGCGGGCTGCTGAGAGCTAAACCCAACAATTTTCTATGATTTTTTCAGATATAGATAATAAACTTATGAACAGCAACT

Publications

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