Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL6P5
Plot displaying the genomic locations of a retrocopy (in chr2A) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr2A:11062227-11063130  UCSC
Strand +
Parental Sequence XM_009426216.2
Parental seq. overlap 833 bp
Parental seq. overlap (%) 87.6%
Genomic Region Intergenic
Retrocopy Summary RPL6P5, located on chr2A:11062227-11063130, is a retrocopy of the parental gene RPL6. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL6
Full Name ribosomal protein L6
Also known as -
Coordinate chr12:110079953-110086179
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL6P4
Bonobo Pan paniscus RPL6P6
Gorilla Gorilla gorilla RPL6P4
Orangutan Pongo abelii RPL6P6
Gibbon Nomascus leucogenys RPL6P35
Green monkey Chlorocebus sabaeus LOC103246174P21
Crab-eating macaque Macaca fascicularis RPL6P35
Rhesus Macaca mulatta RPL6P35
Baboon Papio anubis RPL6P36
Golden snub-nosed monkey Rhinopithecus roxellana RPL6P49
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL6P5
GCTCTTTCCCATCTTGCAAGATGGCAGGTGAAAAAGTTGAGAAGCCGGATACTAAAGAGAAGAAACCTGAAGCAAAGAAGGCTGATGCTGGTGGCAAGGTGAAAAGGCATCACCTCAAGACTGAAAAACTCAAGAAGGGGAAGCCCCATTGCAGCCTCAATCCCGTCCTTGTCAGAGGAGTTGGCAGGTATTCCCAACCTGCCCTGTATTCCAGGAAGGCCACGTGGAAGAGGAAGTACTCAGGTGCGAAGTCCAAGGTTGAAAAGAAGAAGGAGAAGGTTCTTGCAACTGTTACAAACCAGTTGGTGGTGACAAGAACGGTGGTCCTGGGTGGTTAACAAAATGCCTAGATATTATCCTACTGGAGATGCGCCTCGAAAGCTGTTGAGCCACGGCAAAAAAACCTTCAGTCAGCACGTGAGAAAACTGTGAGCCAGCATTACCCCCGAAGCCATTCTAATCATCTTCGCTGGATGCCACAGAGGCAAGAGGGTGGTTTTCTTGAAGCAGCTGGCTAGCGACTTGTTACTTAGGACTGGACCTCTGGTCCTCAATCGAGTTCCTCTACGAAGAACACACCAGACCTTTGTCATTGCCACCTCAACCAAAACTGACATCAGCAATGTAAAAATCCCAAAACATCTCACTGATGCTTGCTTCAAGAACCAGCAGCTGCGGAAGCCCAGACACCAGGAAGGTGAGATCTTCGACACAGAAAAAGAGAAATACGAGATCACAGGGCAGCGCAAGATTGATCAGAAAGCTGTGGACTCACAGATTTTACAAAAATCAAAGTTATTCCTTAGCTCCAGGGCTACCTGAGATCTGTGTTTGCTCTGAGGAATGGAATTTATCCTCACAAATTGGTGTTCTAAATTTCTTAAGAACCTAATTAAATAACTGA
>XM_009426216.2
TGCTTATACACCGGAAGCCGGGACCTTAGTTCTCTTTCCCATCTTGCAAGATGGCGGGTGAAAAAGTTGAGAAGCCAGATACTAAAGAGAAGAAACCCGAAGCCAAGAAGGTTGATGCTGGTGGCAAGGTGAAAAAGGGTAACCTCAAAGCTAAAAAGCCCAAGAAGGGGAAGCCCCATTGCAGCCGCAACCCTGTCCTTGTCAGAGGAATTGGCAGGTATTCCCGATCTGCCATGTATTCCAGAAAGGCCATGTACAAGAGGAAGTACTCAGCCGCTAAATCCAAGGTTGAAAAGAAAAAGAAGGAGAAGGTTCTTGCAACTGTTACAAAACCAGTTGGTGGTGACAAGAACGGCGGTACCCGGGTGGTTAAACTTCGCAAAATGCCTAGATATTATCCTACTGAAGATGTGCCTCGAAAGCTGTTGAGCCATGGCAAAAAACCCTTCAGTCAGCACGTGAGAAAACTGCGAGCCAGCATTACCCCCGGGACCATTCTGATCATCCTCACTGGACGCCACAGGGGCAAGAGGGTGGTTTTCCTGAAGCAGCTGGCTAGTGGCTTATTACTTGTGACTGGACCTCTGGTCCTCAATCGAGTTCCTCTACGAAGAACACACCAGAAATTTGTCATTGCCACCTCAACCAAAATCGATATCAGCAATGTAAAAATCCCAAAACATCTTACTGATGCTTACTTCAAGAAGAAGAAGCTGCGGAAGCCCAGACACCAGGAAGGTGAGATCTTCGACACAGAAAAAGAGAAATATGAGATTACGGAGCAGCGCAAGATTGATCAGAAAGCTGTGGACTCACAGATTTTACCAAAAATCAAAGCTATTCCTCAGCTCCAGGGCTACCTGCGATCTGTGTTTGCTCTGACGAATGGAATTTATCCTCACAAATTGGTGTTCTAAATGTCTTAAGAACCTAATTAAATAGCTGACTACA

Publications

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