Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS12P14
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr6). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr6:47067523-47067929  UCSC
Strand +
Parental Sequence NM_001252509.1
Parental seq. overlap 355 bp
Parental seq. overlap (%) 68.8%
Genomic Region Intragenic (CD2AP)
Retrocopy Summary RPS12P14, located on chr6:47067523-47067929, is a retrocopy of the parental gene RPS12. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS12
Full Name ribosomal protein S12
Also known as -
Coordinate chr6:130171433-130174438
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS12P39
Bonobo Pan paniscus RPS12P15
Gorilla Gorilla gorilla RPS12P16
Orangutan Pongo abelii RPS12P13
Gibbon Nomascus leucogenys RPS12P31
Green monkey Chlorocebus sabaeus RPS12P27
Crab-eating macaque Macaca fascicularis RPS12P4
Rhesus Macaca mulatta RPS12P3
Baboon Papio anubis RPS12P13
Golden snub-nosed monkey Rhinopithecus roxellana RPS12P13
Marmoset Callithrix jacchus RPS12P12
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS12P14
TATTGTTGCTGGAGATGTAATGGATGTTAATACTGCCACTGCTTTATGGGAGGTTCCGAAGACCACCCTCATCCACAATAGCCTAGCAGTGAAATTTGTGAAGCTGGCCAAGCCTTAGACAAGTGGCAAGCTCATGTTTGTGTGCTTGCATCCAACTGTGATGAGCCTTTGTATGTCAAGTTGGTGGAGGCCCTTGGTGCTGAACACCAAATCAACCTAATGAAGGTTGATGACAACAAGCAACTGTAGGGGAATGGGTAGGCCTCTGTAAAATTGACAGAGAGAGAAAACCCTATAAAGAAATTGGTTGTGGTTGGGTAGTAGTTAAGGACTATGGCAAAGAATCTCAGGCCCAGTATGTCATCGAAGAGTCCTTCAAATGCAAGAAATGAACAAATAAAACTTTG
>NM_001252509.1
TGAGGCCTCTTTCCCTGCCGCCGCCGAGTCGCGCGGAGGCGGAGGCTTGGGTGCGTTCAAGATTCAGCTTCACCCGTAACCCACCGCCATGGCCGAGGAAGGCATTGCTGCTGGAGGTGTAATGGACGTTAATACTGCTTTACAAGAGGTTCTGAAGACCGCCCTCATCCACGATGGCCTAGCACGTGGAATTCGCGAAGCTGCCAAAGCCTTAGACAAGCGCCAAGCCCATCTTTGTGTGCTTGCATCCAACTGTGATGAGCCTATGTATGTCAAGTTGGTGGAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAGGTTGATGACAACAAGAAACTAGGAGAATGGGTAGGCCTTTGTAAAATTGACAGAGAGGGGAAACCCCGTAAAGTGGTTGGTTGCAGTTGTGTAGTAGTTAAGGACTATGGCAAGGAGTCTCAGGCCAAGGATGTCATCGAAGAGTATTTCAAATGCAAGAAATGAAGAAATAAATCTTTGGCTCAC

Publications

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