Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS16P7
Plot displaying the genomic locations of a retrocopy (in chr11) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr11:60844856-60845090  UCSC
Strand +
Parental Sequence XM_512651.5
Parental seq. overlap 204 bp
Parental seq. overlap (%) 32.7%
Genomic Region Intergenic
Retrocopy Summary RPS16P7, located on chr11:60844856-60845090, is a retrocopy of the parental gene RPS16. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS16
Full Name ribosomal protein S16
Also known as -
Coordinate chr19:37580750-37583552
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS16P13
Bonobo Pan paniscus RPS16P7
Orangutan Pongo abelii RPS16P8
Gibbon Nomascus leucogenys RPS16P2
Green monkey Chlorocebus sabaeus RPS16P2
Crab-eating macaque Macaca fascicularis RPS16P7
Rhesus Macaca mulatta RPS16P6
Baboon Papio anubis LOC116272849P5
Golden snub-nosed monkey Rhinopithecus roxellana RPS16P11
Marmoset Callithrix jacchus RPS16P3
Gorilla Gorilla gorilla Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS16P7
TGTGTGAAGGGTGGTGGTCATGTGACCCAGATTTATGCTATCCATCAGTCCATCTCCAAAGCCTTAGTGGCCTATTACCGGAAATAAATGGATGAGGCTTCCAAAAGGACCAGAGGCATCCTCATCCAGCATGACTGGACCCTGTCAGTAGCTGACCCCCGTTGCTGCAAATCCAAAAACGTTGGAGGCCCTGGTACCTATACTTGCTACCAGAAATCGTACCGATAAGCCCATC
>XM_512651.5
GTCGCGACGCAGTGCTCAAGGCGCCTGCGCAGACCCTGAAAAGCGGCCAGGGTGGCCCCTAGCTTTCCTTTTCCAGTTGCGGCGCCGCGCGGTGAGGTTGTCTAGTCCACGCTCGGAGCCATGCCGTCCAAGGGCCCGCTGCAGTCGGTGCAGGTCTTCGGACGCAAGAAGACAGCGACAGCTGTGGCGCACTGCAAACGCGGCAATGGTCTCATCAAGGTGAACGGGCGGCCCCTGGAGATGATTGAGCCGCGCACGCTACAGTACAAGCTGCTGGAGCCAGTTCTGCTTCTCGGCAAGGAGCGATTTGCTGGTGTAGACATCCGTGTCCGTGTAAAGGGTGGTGGTCACGTGGCCCAGATTTATGCTATCCGTCAGTCCATCTCCAAAGCCCTGGTGGCCTATTACCAGAAATATGTGGATGAGGCTTCCAAGAAGGAGATCAAAGACATCCTCATCCAGTATGACCGGACCCTGCTGGTAGCTGATCCTCGTCGCTGCGAGTCCAAAAAGTTTGGAGGCCCTGGTGCCCGTGCTCGCTACCAGAAATCCTACCGATAAGCCCATCGTGACTCAAAATTCACTTGTATAATAAACAGTTTTTGAGGGATTTTAAAGTTTCAA

Publications

PMID - Link Title