Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS23P6
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr8:95791904-95792423  UCSC
Strand +
Parental Sequence XM_009448913.1
Parental seq. overlap 476 bp
Parental seq. overlap (%) 61.8%
Genomic Region Intergenic
Retrocopy Summary RPS23P6, located on chr8:95791904-95792423, is a retrocopy of the parental gene RPS23. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS23
Full Name ribosomal protein S23
Also known as -
Coordinate chr5:32569524-32572060
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS23P1
Bonobo Pan paniscus RPS23P6
Gorilla Gorilla gorilla RPS23P5
Orangutan Pongo abelii RPS23P5
Gibbon Nomascus leucogenys RPS23P4
Green monkey Chlorocebus sabaeus RPS23P4
Crab-eating macaque Macaca fascicularis RPS23P7
Rhesus Macaca mulatta RPS23P7
Baboon Papio anubis RPS23P7
Golden snub-nosed monkey Rhinopithecus roxellana RPS23P7
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS23P6
AGCTGCTTCTCTCTTTTGCTCAGGCCCGTAGCACTGCAGGATGGGCAAGTGTCGTGGACCTCATACTGCTAGGAATCTCTGTAGTCACCAACAAGATCAGAAGTGGCATGATAAACAGTACAAGAAAGCCCATTTGGGCACAGCCCTGAAGGCCAACCCTTTTGGAGGTGCTTCTCATGCAAAAGGAATTGTGCTGGGAAAAGTAGGAGTTGAAGCCAAAAAGCCAAATTCTGCCATTAGGAAGTGTGTCAGGGTCCAGTGGATCAAGGATGGCAAGAAAATCACAGCCTTTGTACTCAGTGATGGTTGCTTGAACCTTATTGAGGAAAACCATAAAGCTCTGGTTGCTGGATTTGGTCAAAAAGGTCATGCTGTTGGTGATATTTCTGGAGTTCGCTTTCAGGTTGTCAAAGTAGCCTGTGTCTTTCTTTTGGCCCTATACAAAGGCAAGAAGGAAAGACCAAGATCATAAATTTTAATGGTGAAAACACTGTAGTAATAAATGTTCATATGCCAAAAA
>XM_009448913.1
GGGATTGGTAGTCCATGTTCCTCCGGTCTCCAGCATTCACAAGAAAAAGGGGGGAAAAAACCATGCAAATTAGATATCTCTGAATTTCTTGCAAATTAAATAAGACGCAGATTCTGGCTCAGGAAAGTGATGCAAACGCGTCGTTTTCAAAGGAGAGACTCCAGCCTCGGGTCAGGCGCGGCGCAGACAGCGGCGCGGGGTCCTTGGCTGGGCGGGGCTTGCTCGCGGTGGCTTGTGGTTCCTTCCCGCGCTGCTTCTCTCTTTCGCTCAGGCCCGTGGCGCCGACAGGATGGGCAAGTGTCGTGGACTTCGTACTGCTAGGAAGCTCCGTAGTCACCGACGAGACCAGAAGTGGCATGATAAACAGTATAAGAAAGCTCATTTGGGCACAGCCCTAAAGGCCAACCCTTTTGGAGGTGCTTCTCATGCAAAAGGAATCGTGCTGGAAAAAGTAGGAGTTGAAGCCAAACAGCCAAATTCTGCCATTAGGAAGTGTGTAAGGGTCCAGCTGATCAAGAATGGCAAGAAAATCACAGCCTTTGTACCCAACGACGGCTGCTTGAACTTTATTGAGGAAAATGATGAAGTTCTGGTTGCTGGATTTGGTCGCAAAGGTCATGCCGTTGGTGATATTCCTGGAGTCCGCTTTAAGGTTGTCAAAGTAGCCAATGTTTCTCTTTTGGCCCTATACAAAGGCAAGAAGGAAAGACCAAGATCATAAATATTAATGGTGAAAACACTGTAGTAATAAATTTTCATATGCCAAAAAA

Publications

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