Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS24P1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr10). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr1:155113489-155113863  UCSC
Strand -
Parental Sequence XM_009458778.3
Parental seq. overlap 321 bp
Parental seq. overlap (%) 50.3%
Genomic Region Intragenic (CEP350)
Retrocopy Summary RPS24P1, located on chr1:155113489-155113863, is a retrocopy of the parental gene RPS24. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS24
Full Name ribosomal protein S24
Also known as -
Coordinate chr10:73781081-73788023
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS24P23
Bonobo Pan paniscus RPS24P1
Gorilla Gorilla gorilla RPS24P1
Orangutan Pongo abelii RPS24P5
Gibbon Nomascus leucogenys RPS24P11
Green monkey Chlorocebus sabaeus RPS24P19
Crab-eating macaque Macaca fascicularis RPS24P3
Rhesus Macaca mulatta RPS24P3
Baboon Papio anubis RPS24P1
Golden snub-nosed monkey Rhinopithecus roxellana RPS24P14
Marmoset Callithrix jacchus RPS24P54
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS24P1
GCCATCATGAATGACACAATAACTATTTGTACTAGGAAGTTCATGACCAATCAACTACCTCAGGGAGCACAAACAGTCGTACATGTCCTTCACCCTGGAAAGGGAACAGTACCAAAGACAGAAACTTGGGGAAAACTAGCCCAAATGTACAAAGCCACACCAATGTCATCTTTGTATTTGGATTCAGAACCCATTTTGCTGGTGACAAGATAAATGGCTTCAGCATGATTTCTGATTCCTTGGATTATGCAATGAAAAATGAGACCAAACACAGACTTTCAAGACATGGCCTGTATGAGAGAAAAAAAGACCCCAAGGAAACAGCAAAAGGAACACAAGAACAGAATGAAGAAAGTCAGAGGGACTGCAAAGGCT
>XM_009458778.3
TCGGCGCGGTCAGCCTCGTGGCGCGCCCACGCCCCCACGCTGGCTCTTCCCGGGGTCCTTCCGTGCGCGTTGATATGATTGGCCGGCGAATCGTGGTTCTCTTTTCCTCTTTGGCTGTCTGAAGATAGATCGCCATCATGAACGACACTGTAACTATCCGCACTAGAAAGTTCATGACCAACCGACTCCTTCAGAGGAAACAAATGGTCATTGATGTCCTTCACCCCGGGAAGGCAACAGTGCCTAAGACAGAAATTCGGGAAAAACTAGCCAAAATGTACAAGACCACACCGGATGTCATCTTTGTATTTGGATTCAGAACTCATTTTGGTGGTGGCAAGACAACTGGCTTTGGCATGATTTATGATTCCCTGGATTATGCAAAGAAAAATGAACCCAAACATAGACTTGCAAGACATGGCCTGTATGAGAAGAAAAAGACCTCaagaaagcaacgaaaggaacgcaagaacagaatgaagaaagTCAGGGGGACTGCAAAGGCCAATGTTGGTGCTGGCAAAAAGtgagctggagattggatcacagCCGAAGGAGTAAAGGTGCTGCAATGATGTTAGCTGTGGCCACTGTGGATTTTTCACAAGAACATTAATAAACTAAAAACTTCATGTG

Publications

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