Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS26P50
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chrX:66069562-66069809  UCSC
Strand -
Parental Sequence NM_001252589.1
Parental seq. overlap 205 bp
Parental seq. overlap (%) 30.2%
Genomic Region Intragenic (TEX11)
Retrocopy Summary RPS26P50, located on chrX:66069562-66069809, is a retrocopy of the parental gene RPS26. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS26
Full Name ribosomal protein S26
Also known as -
Coordinate chr12:33198158-33200475
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS26P85
Bonobo Pan paniscus RPS26P46
Gorilla Gorilla gorilla RPS26P51
Orangutan Pongo abelii RPS26P50
Gibbon Nomascus leucogenys RPS26P57
Rhesus Macaca mulatta RPS26P45
Baboon Papio anubis RPS26P44
Golden snub-nosed monkey Rhinopithecus roxellana RPS26P16
Marmoset Callithrix jacchus RPS26P59
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS26P50
CATAGTAGAGGCCACAGCTATCAGGGACATAGCTGAAGCCAGTGTCTTTGATGTCTATGTGCTTCCCAAGCTGTTTGTGAAGCTACATTATTGCATGAGTTGCACCATTCACAGCAAGGTAGTCCAGAATCAATCTCGTGAAGCCGGTAAGGACCAAACACCCCAACCCTGATTTAGACCTATGGGTGCTGCCCACCAACCTCCACCAAAGCCTACATATGGAGCTGAGTCCTTAAGGACTGAAA
>NM_001252589.1
GGAGACACATAACCTCGATTTTCTTCCGCCATCCGGCTAAATAGTCCCATGTGCACTTTGTTCCATGGATAAATAAACACTAGGAACGCATTTCCACCCTAGATTTCAGCAGAAATGCTGAATGTAAAGGAATATTTGAGTAAAGTGAGTTGCCGTTCTTGAAGCCCGTCTCCTAAGGATTCTCCCGGTGTGCGCGTAGGGATCTCATGCTATATAAGAGGGCCCTGCCAGGCACCGCCTCCTCTCTCCGGTCCGTGCCTCCAAGATGACAAAGAAAAGAAGGAACAACGGTCGTGCCAAAAAGGGCCGCGGCCACGTGCAGCCTATTCGCTGCACTAACTGTGCCCGATGCGTGCCCAAGGACAAGGCCATTAAGAAATTCGTCATTCGAAACATAGTGGAGGCCGCAGCAGTCAGGGACATTTCTGAAGCGAGCGTCTTCGATGCCTATGTGCTTCCCAAGCTGTATGTGAAGCTACATTACTGTGTGAGTTGTGCAATTCACAGCAAAGTAGTCAGGAATCGATCTCGTGAAGCCCGCAAGGACCGAACACCCCCACCCCGATTTAGACCTGCGGGTGCTGCCCCACGTCCCCCACCAAAGCCCATGTAAGGAGCTGAGTTCTTAAAGACTGAAGACAGGCTATTCTCTGGAGAAAAATAAAATGGAAATTGTAC

Publications

PMID - Link Title