Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS6P2
Plot displaying the genomic locations of a retrocopy (in chr2B) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr2B:65558286-65558976  UCSC
Strand +
Parental Sequence XM_003312012.5
Parental seq. overlap 582 bp
Parental seq. overlap (%) 65.8%
Genomic Region Intragenic (CCDC141)
Retrocopy Summary RPS6P2, located on chr2B:65558286-65558976, is a retrocopy of the parental gene RPS6. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS6
Full Name ribosomal protein S6
Also known as -
Coordinate chr9:19370341-19374352
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS6P2
Bonobo Pan paniscus RPS6P1
Gibbon Nomascus leucogenys RPS6P20
Green monkey Chlorocebus sabaeus RPS6P8
Crab-eating macaque Macaca fascicularis RPS6P12
Rhesus Macaca mulatta LOC712274P12
Baboon Papio anubis LOC101000688P10
Golden snub-nosed monkey Rhinopithecus roxellana RPS6P21
Marmoset Callithrix jacchus RPS6P21
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS6P2
cAAAGTTCATACTTTTTATGACAAGCACATGGCCACAGAAGTAGCTGCTGATGCTCTGGGTGAAGAATGGAAGGATTATGTAGTCCACATCAGTGGTAGGAATGACAAACAAGGTTTTCCCATGAAGCAGGATGTCTTGGCCCATGACCATGTCCACCTGCTACTGAGTACAGGGCATTCCTGTTATACAGCCAGAAGAACTGGAGAAAGAAAGTGTAAAGCTGTTCAGGATTGCATTGTGGATGTCAATCTAAATGTTCTCAATTGACTTATTGTAAAAAAGGGAGAGAAGGATGTTCCTGGACTGACTGACACCATGATGCCTCATCACTTGGGGCCCAAAAGAGCTAGCAGAATCCACAAACTTTTCAATCTCTCTAAAAAAAGATGATGTCCAACAATATGTGGTAAGAAAGGCCTTTAACCAAGAAGGTAAGCCTAGGACCAACACACCCAAGATTCAGCATCTTGTTACTCCAAATGTCTTACAACATAAATGCTGCTATGTTGCTCTGCAGAAACAGTATACTATAGAACATGCTAAACTTTTGGCCAAAAGAATGAAGGAGGCCAAAAAAATACGCCAGGAGCAGATTATCAAGAAACGCAGCCTGTCCTCTCCAAGAGCGTCTACTTCTGAGTCCAGTCAATAATAATATTTTTTGAGTAACAAGTAAATAAAATCAGACT
>XM_003312012.5
TCTCGCGAGAACTGAAAGCGCCTATGTGACCTGCGCTAAGCGGAAGTTGGCCCTCTTTTCCGTGGCGCCTCGGAGGCGTTCAGCTGCTTCAAGATGAAGCTGAACATCTCCTTCCCAGCCACTGGCTGCCAAAAACTCATTGAAGTGGACGATGAACGCAAACTTCGTACTTTTTATGAGAAGCGTATGGCCACAGAAGTTGCTGCTGACGCTCTGGGTGAAGAATGGAAGGGTTATGTGGTCCGAATCAGTGGTGGGAACGACAAACAAGGTTTCCCCATGAAGCAGGGTGTCTTGACCCATGGCCGTGTCCGCCTGCTACTGAGTAAGGGGCATTCCTGTTACAGACCAAGGAGAACTGGAGAAAGAAAGAGAAAATCAGTTCGTGGTTGCATTGTGGATGCAAATCTGAGCGTTCTCAACTTGGTTATTGTAAAAAAAGGAGAGAAGGATATTCCTGGACTGACTGATACTACAGTGCCTCGCCGCCTGGGCCCCAAAAGAGCTAGCAGAATCCGCAAACTTTTCAATCTCTCTAAAGAAGATGATGTCCGCCAGTATGTTGTAAGAAAGCCCTTAAATAAAGAAGGTAAGAAACCTAGGACCAAAGCACCCAAGATTCAGCGTCTTGTTACTCCACGTGTCCTGCAGCACAAACGGCGGCGTATTGCTCTGAAGAAGCAGCGTACCAAGAAAAATAAAGAAGAGGCTGCAGAATATGCTAAACTTTTGGCCAAGAGAATGAAGGAGGCTAAGGAGAAGCGCCAGGAACAAATTGCGAAGAGACGCAGACTTTCCTCTCTGCGAGCTTCTACTTCTAAGTCTGAATCCAGTCAGAAATAAGATTTTTTGAGTAACAAATAAATAAGATCAGACTCGGA

Publications

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