Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SARNPP2
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr8:99449856-99450604  UCSC
Strand -
Parental Sequence XM_522431.7
Parental seq. overlap 636 bp
Parental seq. overlap (%) 66.7%
Genomic Region Intragenic (GRHL2)
Retrocopy Summary SARNPP2, located on chr8:99449856-99450604, is a retrocopy of the parental gene SARNP. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SARNP
Full Name SAP domain containing ribonucleoprotein
Also known as DNAJC14
Coordinate chr12:33410028-33483504
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SARNPP2
Bonobo Pan paniscus SARNPP2
Gorilla Gorilla gorilla SARNPP2
Orangutan Pongo abelii SARNPP2
Gibbon Nomascus leucogenys SARNPP1
Green monkey Chlorocebus sabaeus SARNPP1
Crab-eating macaque Macaca fascicularis SARNPP5
Rhesus Macaca mulatta SARNPP5
Baboon Papio anubis SARNPP5
Golden snub-nosed monkey Rhinopithecus roxellana SARNPP5
Marmoset Callithrix jacchus SARNPP8
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SARNPP2
CTCCAGGCATATTTTTCAGGGCATGCTGAAGAGGCAAATGAAGATGTACTGGGAGATGAAACAGAGGAAGAAGAAACAAAGCCCCATAGAAATCCCTGTCAAAGAGGAAGAACTCCCTGAAAAAACTGTTGACGTGGAAGCAGAGAAGAAAGTGGTAAAAATTACATCTGAAATACCACAGGGAGAGAGAATGCAGAAGAGGGCTGAAAAAGTCCATGTACCTGTGAGCTTGTAAAGTAAGAAAACTGCCCGGGCAGCTAGGTTTGGGACTTCTTCAGTTTCAACAAAAGGTCTGTCATCTAACAACAAACCTATCAAGAAACCTGGATAAGCTAAAGGAAAGAGCTCAAAGATTTGGTTTGAATGGCTCTTCAATCTCCAGAAAATCTGAAGATGATGAGAAACTGAAAAGGAGGCAGGACTGATTTGGGATTATCACTGGTTCAGCTGGAACCAGAAGGAACACAGAGGATACAGAGGCAAAGAATAGGAAAAGAGCCGCGCGCTATGGGATTGCCTGCTGAAAAGTTCATGCTGCTTTCTGTTCTCCAGTGGTTTCCATTTCTGTGATTCTTCTCGGTCACAAATATACCTAAATGCACAGTCACGTACCTACCTCCTGCCTTGCAATGAGGGCACATGTACCCCAGCTACATGTGGGAACTCCAGCAGCAATTTGACTTATTGATGTTCCAACTTAAAGCTGtAGTTAAAAAAAA
>XM_522431.7
TCTACGCCTAAGGCGGGAGCTCCTGGAGGCGGAGGCCGCGGGTGGGGGCCGAGTGGAGTGAGGGGTAACAAGATGGCGACCGAGACGGTGGAGCTCCATAAGCTAAAGCTTGCCGAACTAAAGCAAGAATGTCTTGCTCGTGGTTTGGAGACCAAGGGAATAAAGCAAGATCTTATCCACAGACTCCAGGCATATCTTGAAGAACATGCTGAAGAGGAGGCAAATGAAGAAGATGTACTGGGAGATGAAACAGAGGAAGAAGAAACAAAGCCCATTGAGCTCCCTGTCAAAGAGGAAGAACCCCCTGAAAAAACTGTCGATGTGGCAGCAGAGAAGAAAGTGGTGAAAATTACATCTGAAATACCACAGACTGAGAGAATGCAGAAGAGGGCTGAACGATTCAATGTACCTGTGAGCTTGGAGAGTAAGAAAGCTGCTCGGGCAGCTAGGTTTGGGATTTCTTCAGTTCCAACAAAAGGTCTGTCATCTGATAACAAACCTATGGTTAACTTGGATAAGCTGAAGGAAAGAGCTCAAAGATTTGGTTTGAATGTCTCTTCAATCTCCAGAAAGTCTGAAGATGATGAGAAACTGAAAAAGAGGAAGGAGCGATTTGGGATTGTCACAAGTTCAGCTGGAACTGGAACCACAGAGGATACAGAGGCAAAGAAGAGGAAAAGAGCAGAGCGCTTTGGGATTGCCTGATGAAAAGTTCCTGATACTTTCTGTTCTCCAGTGTTTTCCATTTCTCTCCTTCTTCTTGGTCACATATATGCCTAAATGCACAGTCATGTGCCTACGTCCTGCCTCGCAATGAGGGAGCATGTACCCCAGGTACATCCGTGAACTGCGGCAGCAGTTTGACTTATTGCTGTTTCAGCTTTAAGGttgttgtgtttttgtttttgattatgttgcttgttAATAAAAAAAATAGAAAAGAGAA

Publications

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