Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name SDAD1P1
Plot displaying the genomic locations of a retrocopy (in chr2B) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr2B:34184635-34184838  UCSC
Strand -
Parental Sequence XM_001152561.5
Parental seq. overlap 178 bp
Parental seq. overlap (%) 5.9%
Genomic Region Intergenic
Retrocopy Summary SDAD1P1, located on chr2B:34184635-34184838, is a retrocopy of the parental gene SDAD1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SDAD1
Full Name SDA1 domain containing 1
Also known as -
Coordinate chr4:53226377-53267359
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SDAD1P5
Bonobo Pan paniscus SDAD1P1
Gorilla Gorilla gorilla SDAD1P1
Orangutan Pongo abelii SDAD1P1
Gibbon Nomascus leucogenys SDAD1P4
Green monkey Chlorocebus sabaeus SDAD1P3
Crab-eating macaque Macaca fascicularis SDAD1P3
Rhesus Macaca mulatta SDAD1P3
Baboon Papio anubis SDAD1P1
Golden snub-nosed monkey Rhinopithecus roxellana SDAD1P3
Marmoset Callithrix jacchus SDAD1P1
Horse Equus caballus SDAD1P2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SDAD1P1
ATGATGGTGCGGTATAGCTAGTATGTCCGGTCAAAAAATAAGCTTTCCTTCAGAGAAAAGCAGCTGGTGCTACAAGATGTGCTTCTGAAAAAGAGAAAAAGAATGCAGTAACTTCTAAGCAAGTTTCCCATTGAAGGAGAATGCTAAATTTGTGTCATTACTCTGAAAATTAGTAAATCAAGAATGTTTGTTTACATTAAAAAA
>XM_001152561.5
CTGTTTCCGGTCATACCCGGAAACACGAGTACAAGCTGCAGCTGGCGGGGATTGCAGGGTGCCGGCCGTCTGAGTTTTTTTAAAACTGCTCGCTGCGAAGTCTGTCTGCAGCCAAAATGTCCAACAGAAACAACAACAAGCTGCCCAGCAACCTGCCGCAGTTACAGAATCTAATCAAGCGAGACCCGCCGGCCTACATCGAGGAGTTTCTACAGCAGTATAATCACTACAAATCCAATGTGGAGATTTTCAAATTGCAACCAAATAAACCCAGCAAAGAACTAGCAGAGCTGGTGATGTTTATGGCACAGATTAGTCACTGCTACCCAGAGTACCTAAGTAATTTTCCTCAAGAGGTGAAAGATCTTCTCTCCTGCAATCATACCGTATTGGATCCAGATCTGCGAATGACATTTTGCAAAGCTTTGATCTTGCTGAGAAATAAGAATCTCATCAATCCATCAAGCCTGCTAGAACTCTTCTTTGAACTTTTTCGTTGCCATGATAAACTTCTGCGAAAGACTTTATACACACATATTGTGACTGATATCAAGAATATAAATGCAAAACACAAGAACAATAAAGTGAATGTAGTATTGCAAAATTTCATGTACACCATGTTAAGAGATAGCAATGCAACCGCAGCCAAGATGTCTTTAGATGTAATGATTGAACTCTACAGAAGGAACATCTGGAATGATGCCAAAACTGTCAATGTTATCACAACTGCATGTTTCTCTAAGGTCACCAAGATATTAGTTGCCGCTTTGACATTCTTTCTTGGGAAAGATGAAGATGAAAAACAGGACAGTGACTCCGAATCTGAGGATGATGGACCAACAGCAAGAGACCTGCTAGTACAATATGCTACAGGGAAGAAAAGTTCCAAAAACAAGAAAAAGTTGGAAAAGGCAATGAAAGTGCTCAAGAAACAAAAAAAGAAGAAAAAACCAGAGGTGTTTAACTTTTCAGCCATTCACTTGATTCACGATCCCCAAGATTTTGCAGAAAAACTACTAAAGCAGCTTGAGTGCTGTAAGGAGAGGTTTGAAGTGAAGATGATGCTCATGAACCTTATCTCCAGATTGGTGGGAATTCATGAGCTTTTCCTCTTCAATTTCTATCCCTTTTTGCAAAGGTTTCTGCAGCCCCACCAAAGAGAAGTAACAAAGATCCTTCTGTTTGCTGCACAAGCATCTCATCACCTAGTACCCCCAGAGATTATTCAATCATTGCTTATGACTGTGGCAAACAATTTTGTTACCGACAAGAACTCTGGAGAAGTCATGACAGTAGGAATCAATGCTATAAAGGAGATAACAGCTCGATGTCCTCTGGCCATGACTGAAGAACTTCTCCAAGACCTGGCTCAGTATAAAACACACAAGGATAAGAATGTAATGATGTCTGCTAGAACTTTGATTCACCTCTTCCGAACACTGAATCCTCAGATGCTGCAGAAGAAATTCCGGGGTAAGCCTACAGAGGCCTCCATAGAAGCAAGAGTACAAGAATATGGAGAATTAGATGCTAAAGATTACATTCCAGGAGCAGAAGTTCTGGAAGTTGAGAAAGAAGAGAATGCTGAAAATGATGAAGATGGATGGGAAAGTACTAGTCTCAGTGAGGAGGAGGATGCTGATGGTGAATGGATTGATGTGCAACACTCTTCCGATGAAGAACAGCAAGAAATCTCCAAGAAGCTGAACAGCATGCCCATGGAGGAGCGGAAGGCCAAAGCTGCAGCCATCAGCACTAGCCGAGTTTTAACTCAGGAAGACTTCCAGAAAATCCGCATGGCCCAAATGAGAAAAGAACTTGATGCTGCCCCCGGGAAATCCCAGAAGAGGAAATACATTGAAATAGACAGTGATGAAGAGCCCAGGGGTGAATTACTTTCTCTTCGGGACATTGAACGCCTTCATAAAAAGCCAAAGTCTGACAAAGAGACAAGACTAGCAACTGCAATGGCTGGAAAGACAGACCGAAAAGAATTTGTGAGGAAGAAAACCAAAACAAATCCATTTTCCAGTTCGACAAATAAAGAGAAGAAAAAACAGAAGAACTTTATGATGATGCGGTATAGCCAGAATGTCCGGTCAAAAAATAAGCGTTCCTTCCGAGAAAAACAGTTGGCACTACGAGATGCACTTTTGAAAAAGAGAAAAAGAATGAAGTAACTTCCTGGCAAGTTTTCCATTCCTAGAAGAATGCTAAGTTTGTGTCATTGCTCTGAAAATTGGTAAATCAAGCATGTTTGTTTACATTAAAAAGTCCAGACACACTGTATTGTGAAAACTGCTGAACATGTGGCAGCAATTTTGTGTTTTTATTTTGGAGACGGCTAATGGTAGGAATGTTAATGTAAATGGTGGTAATGTAAAATCATTTCATTTAtcattcatgcaaaaaaaagtatgtattgagtgcctattcattgtcactgtagatgtaaaacgaatgagctgtaaccccttcactcaaggcattcacagcttagctgtgagggtggacacacatatgtgtatttacagtgcagtgtaaatagttctgtagtagaggttaactccatatttctgtgaggtcactgaggccttatggactaactctgtgaggataggAGTTATATATTCTTATAAAACAAAACAAAACAGGACAATGTTACAAGAGTAAGAGGTTCTTACTTGTACATAGGCTTTCCTGCTGAAAACAGGCCCCTGCTGTACAGATTTTGGGTACATAATTTAGCTCTTTTAGTCAATCCAAGAGATTTAAGTGACCCCCTGTGTGGtttttttttttttttttGAATGCCATGTAAAGGCTTTCTGGTTAAGACCTCACTTTTAAAACTGCCTTAAGTATAAATAGTACCTTTGGAATATATTTAGTTCATCATTTGAGCTGCCTTCATACTGGTTTCCTCAGCCTTCCTTCAGCCTGTAATATTTTTAGCTCACTGTTTACCTTGTCTCAATAAAAGGTTTCTAATGCCAAATACGTA

Publications

PMID - Link Title