Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SEPT14P1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr1:172327125-172327674  UCSC
Strand -
Parental Sequence XM_519103.5
Parental seq. overlap 525 bp
Parental seq. overlap (%) 27.3%
Genomic Region Intragenic (ASPM)
Retrocopy Summary SEPT14P1, located on chr1:172327125-172327674, is a retrocopy of the parental gene SEPTIN14. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SEPTIN14
Full Name septin 14
Also known as SEPT14
Coordinate chr7:56028534-56111417
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SEPTIN14P12
Bonobo Pan paniscus SEPTIN14P1
Gorilla Gorilla gorilla SEPTIN14P1
Orangutan Pongo abelii SEPT14P1
Gibbon Nomascus leucogenys SEPTIN14P1
Green monkey Chlorocebus sabaeus SEPT14P1
Crab-eating macaque Macaca fascicularis SEPT14P1
Rhesus Macaca mulatta SEPTIN14P1
Baboon Papio anubis SEPTIN14P1
Golden snub-nosed monkey Rhinopithecus roxellana SEPTIN14P1
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SEPT14P1
TGGGCTGTTACCCTTTGCTGTGGTAGGGAGTATGGATGAAGTGAAAGTTGGTAAAAGGATGGTCAGAGGCCGTCACTAGCCTTGGGGAGTTTTCCAAGTGGAAAATGAAAATCACTGTGACTTCGTTAAGCTCCAAGATATGCTTCTTTGTACCAATGTGGAAAATCTAAAAGAAAAACCCACACTCAGCACTATGAATGCTGTAGGTACCAAAAACTGCAGAAAATGGGCTTTACAGATGTGGGCCCAGACAACCAGCCAGTTAGTTTTCAAGAAATCTTTGAAGCCAAAAGACAAGAGTGCTATGATCAATGTCAGAGGGAAGAAGAGTTGAAACAGATTTATGCAGCGAGTCAAGGAGAAAGAAGCTGAAAAAGAGCTGCAGGACAAGTTCGAGCATCTTAAAATGATTCCACAGGAGGAGATAAGGAAGCTCGAAGAAGAGAAAAAACAACTGGAAGGAGAAATAATAGATTTTTTATAAAATGAAGGCTGCTTCTGAGGCACTGCAGACTCAGCTGAGCACCAATACAAAGAAAGACAAACATCG
>XM_519103.5
CAGTGAATATTTATTTGGTCCACAACTGgggacagtagaaaggacaccagcttggaatcagttcggacctgtgtctgctgcacagctgaatccctgggaaaCTCTTTTAGTGTAGCATGGCAGAAAGAACAATGCCTATGCCCACACAAATACCTGCTGATGGAGATACACAAAAAGAAAATAATATTCGTTGTTTAACTACGATCGGACATTTTGGTTTTGAATGTTTGCCCAATCAGTTGGTGAGCAGATCTATCCGACAAGGATTCACTTTTAATATTCTCTGTGTGGGGGAAACTGGAATTGGAAAATCGACACTGATAGACACATTGTTTAATACTAACTTGAAAGATAACAAATCCTCACATTTTTACTCAAATGTTGGACTTCAAATTCAGACATATGAACTTCAGGAAAGCAATGTTCAGTTGAAATTGACTGTTGTGGAGACAGTAGGGTATGGTGATCAAATAGACAAAGAAGCCAGCTACCAACCAATAGTTGACTACATAGATGCCCAATTTGAGGCCTATCTTCAAGAAGAACTGAAGATTAAACGTTCCTTGTTTGAGTACCATGATTCTCGCGTCCACGTGTGTCTTTACTTCATTTCACCTACAGGACATTCCCTGAAGTCTCTTGATCTATTAACAATGAAGAATCTTGACAGTAAGGTGAATATTATACCACTGATTGCCAAAGCAGACACAATTTCTAAAAATGATTTACAGACGTTTAAGAGTAAGATAATGAGTGAATTGATTAGCAATGGCATCCAGATATATCAGCTCCCAACAGATGAAGAAACTGCTGCTCAAGCGAACTCCTCAGTTAGTGGGCTGTTACCCTTTGCTGTGGTAGGGAGTACAGATGAAGTGAAAGTTGGAAAAAGGTTGGTCAGAGGCCGTCACTACCCTTGGGGAGTTTTGCAAGTGGAAAATGAAAATCACTGTGACTTCGTTAAGCTCCGAGATATGCTTCTTTGTACCAATATGGAAAATCTAAAAGAAAAAACCCACACTCAGCACTATGAATGTTATAGGTACCAAAAACTGCAGAAAATGGGCTTTACAGATGTAGGCCCAAACAACCAGCCAGTTAGTTTTCAAGAAATCTTTGAAGCCAAAAGACAAGAGTTCTATGATCAATGTCAGAGGGAAGAAGAAGAGTTGAAACAGAGATTTATGCAGCGAGTCAAGGAGAAAGAAGCAACATTTAAAGAAGCTGAAAAAGAGCTGCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAAGAGGAGATAAGGAAGCTCGAGGAAGAGAAGAAACAACTGGAAGGAGAAATCATAGATTTTTATAAAATGAAAGCTGCCTCCGAAGCACTGCAGACTCAGCTGAGCACCGATACAAAGAAAGACAAACATCcaagaaggccctcagcagatgtagcccctctacttggacttcatcaacctccagaaccctgaaccaaataaatttctgttcattataaattacctgttatagcagcacagaatggatgaagacaAGTGCCTCTGAATGACTTACCCTAGAGAGAAgaaactggttaaaaatgcaaatttttgagtgtctcccagagctctgaatctaaatctctggatgtctaaatctctggatatctaatttttaacaactttcctggtgattcttaagcacattaaaatttgagaactgctgCTCTATGTCCAGTATCATTTTAACCTGGAAAATAAGCACTCACCAACGCTTCAATCAATGTTATTACCTGAGTTTGCCTGATCATAAAGGTCACTAGAGGGCTTGATAAAAATACACATTCTTAGGTCTCTCTGCTGGTGGGAATCACCTATGAAACAAAGCCCAAAAATCTGTATTTAAAAAAtttttttatatgttttgcttttcttgagatagggtctc

Publications

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