Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SLC35E3P1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr1:196736832-196737561  UCSC
Strand -
Parental Sequence XM_001153818.5
Parental seq. overlap 592 bp
Parental seq. overlap (%) 16.6%
Genomic Region Intergenic
Retrocopy Summary SLC35E3P1, located on chr1:196736832-196737561, is a retrocopy of the parental gene SLC35E3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SLC35E3
Full Name solute carrier family 35 member E3
Also known as -
Coordinate chr12:66263975-66286570
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SLC35E3P1
Bonobo Pan paniscus SLC35E3P1
Gorilla Gorilla gorilla SLC35E3P1
Orangutan Pongo abelii SLC35E3P1
Gibbon Nomascus leucogenys SLC35E3P1
Green monkey Chlorocebus sabaeus SLC35E3P1
Crab-eating macaque Macaca fascicularis SLC35E3P1
Baboon Papio anubis SLC35E3P1
Golden snub-nosed monkey Rhinopithecus roxellana SLC35E3P1
Marmoset Callithrix jacchus SLC35E3P1
Cow Bos taurus SLC35E3P1
Dolphin Tursiops truncatus SLC35E3P1
Rhesus Macaca mulatta Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Sheep Ovis aries Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SLC35E3P1
TCCCTAACATGAACCTGACCCTGGGGCATCTTGTGGTCACCTGGCTGGGCTTGCACATCTGTCAGAAATTGGTTATATTTGCCTCAACATGTCTGCCACCCCAAGATCCTCCTTCTGGCCTTTAGCTTCTGTGATTACAAGGTCTTCACCAACGTCTCTCTGCAGGGCAACTCCACAGGCGTCCATCAGCTGATCAAGGTCATCATTACACTGGTGATTATGGCCATGCAGACCCTCTGCCACCAGAAGGCCTTCTTCACCAGAATATAACACAACACTGATTCCTGTAACTTTAGGTGTAATCCTAAATTCTTATTACAGTGTGAAATGTAATGTCCTTGGAAGGATGTTTTCTGCTCTCAGTGTTTTAGTTATACCCCCTTATCCAGTGTGGGCAGAAACCAAGCAGAATGAGTTTCAAGTAAACTCAATGCTGCTGCAAGCACTATCAAGCACCAATACCTTCTGCTGTTATTGGTTGCTTCTCTGAGTCAGTGCATGGAGAGCAAGAAATATCTGGTCTCTGGTCAGCTTCTGCTTTGCCTATGGTGCAGCTATCTGAAATAATGGTTGTCATGGTGAACTTATCAATTTACTGGGTCACTAGGTACACTTCATCAGTCACCTATGACATGTTTGGGCACTTCAAGTTCTGACTTGCTTTATTTGGAGGACATGTGTTATTTAAAGATCCACTGTTAATTAACCAGAGTCTTGGCATTTTATGTAG
>XM_001153818.5
GCCAGCGGCTCGGGGGCGGAAGCACTGGAGCCCCGAGTCACGTGGCTGCGGGCGGAGATGAGCGGGGCTTGGGACGTGCTGCGGCGTCCTAGCTGGCTTACAGGGCGGCGGCGGGGTGTGTGTCCTCTGTTAAGAGTGCTACTCGCCCGGGGTTGATCTGTGCATGCCACTCCTGGGTCAGACGGTGAGGTCGGCGTCTGCGAGGACGCAGCGGTGGAGTAGAAGGGCAGCCGGAGACAGGCCCGGCGCCCCTTCCGAGGCTAGACGGCCCCAGCTTCGCGGGGATCATGGCATTGCTGGTGGACCGAGTGCGGGGCCACTGGCGAATCGCCGCCGGGCTCCTGTTCAACCTGCTGGTGTCCATCTGCATTGTGTTCCTCAACAAATGGATTTATGTGCACCACGGCTTCCCCAACATGAGCCTGACCCTGGTGCACTTCGTGGTCACCTGGCTGGGCTTGTATATCTGCCAGAAGCTGGACATCTTTGCCCCCAAAAGTCTGCCGCCCTCCAGGCTCCTCCTCCTGGCCCTCAGCTTCTGTGGCTTTGTGGTCTTCACTAACCTTTCTCTGCAGAACAACACCATAGGCACCTATCAGCTGGCCAAGGCCATGACCACGCCGGTGATCATAGCCATCCAGACCTTCTGCTACCAGAAAACCTTCTCCACCAGAATCCAGCTCACGCTGATTCCTATAACTTTAGGTGTAATCCTAAATTCTTATTACGATGTGAAGTTTAATTTCCTTGGAATGGTGTTTGCTGCTCTTGGTGTTTTAGTTACATCCCTTTATCAAGTGTGGGTAGGAGCCAAACAGCATGAATTACAAGTAAACTCAATGCAGCTGCTGTACTACCAGGCTCCGATGTCATCTGCCATGTTGCTGGTTGCTGTGCCCTTCTTTGAGCCAGTGTTTGGAGAAGGAGGAATATTTGGTCCCTGGTCAGTTTCTGCTTTGCTTATGGTGCTGCTATCTGGAGTAATAGCTTTCATGGTGAACTTATCAATTTATTGGATCATTGGGAACACTTCACCTGTCACCTATAACATGTTCGGACACTTCAAGTTCTGCATTACTTTATTCGGAGGATACGTTTTATTTAAGGATCCACTGTCCATTAATCAGGCCCTTGGCATTTTATGTACATTATTTGGCATTCTCGCCTATACCCACTTTAAGCTCAGTGAACAGGAAGGAAGTAGGAGTAAACTGGCACAACGTCCTTAATTGGGTTTTTGTGGAGAAAAGAATGTTGTCCCAAGAAGATAAAAAATATTGTTAAGTGTGCAAGTTATTTAAAAAAAAAAAATTGggccaggcacggtggctcacgcctgtaatcccagcactttgggaggccaaggccagcagatcacttgaggtcaggagttcgagaccagcctgaccaacatggagaaaccctgtctcaactaataatacaaaattagccaggcgtggtggtgcatgcctgtaatcccaactactcgggaggctgaggcaggagaatcacttgaacccgggaggcggcggttgcagtgagccgagatcgtaccattgcactccagcctgggcaacaagagcaaaactccatttcaaaaaaaaaaaaTTGGTGACAGACTCAATGATGGAATGATTTGTCGGAATTAACACAAAGCAGATTTTATTCATATAATGACTTTTTTTAAAGAGTCTCTTTTTAAAAAAAACTTAATTCTCTAAAACCAAAATGGTTCATGCTTCTTTTTAAAAATGATTGTATAAAATGTATGGAATGGttagcctggtgtggtggtgcacacctgtaatcccagctacttgggaggctgagacatgagaatcgcttgagcctgggaggcggaggttgcaatgagccaagattgtaccactgcactccagcctgggcgacagagcaagacactgtctcTCTCTCTCTCTCCatatatatatgtgtgtgtgtgtttatatatatatatgtttgtgtgtgtatacatatatacacatatatacacacacacatacatatacatatgtatatatataccatcccatatatatgtgggatatatatatatatatatatatggatatggttatatatatGGGATGGTTTGGTTGGTCCCAGCAAAGTACATGAAAATTAAAGTTCTGTGATAATGACAAAGGAATTGCTGTTACTGTACTGCAAATATGCTGTGGGTTCTTGGTGTTCAAACTCTTCTAAGGAAGGACACACAGTAGCTCTCTGCTTGCTGATAGATGGTGTCCCAGTGTGAGATTTGTTATTTTGATCAGAGTATTCAAATCAGAATTTAAATCTAGTGTTTCTATTTTAGTTTAGCTTCCTGATTTATATAAATGAAATCTCATTTATAAAGTATAATAAAGATGACTGTAAGACAAAATCCAATTCTAAAAGTATGATTTTTTTCTAGTAGAAAATTGATGTAAGAAATCATACATTATTCATACATTTATAGGTCATCTCTTTGAGTTTTCAGTGAACTATAGAAACTATATGAAGTTAAAAAACAAAACAGCAGCCAATCTcggtggctcacacctgtaatcccagcactttggaaggttgaggcaggcagatcacctgaggttgggagttcaagaccagtctgaccaacatggagaaatcccgtctctactaaaaatacaaaattagccaggcatggtggcacatgcctgtaatcccagctgctcgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgtggtgagccgagatcatgccattgctctccagcctgggcaacaagagtgaaactccatctcaaaaaaaaaaaaaaaaaaaaaTAGCCCTATGTTTAAATGGCTCAAAGAAAAGACTATAAATGGAATTGAACATGTTTGTTAGCTGTTTGAGCATTTTATATTGGTAAAttttttattttcttattttttgtcttacagtcgaccaggctggaatgcagtggcacaatcatggctcactgcagcctcagcctcctgggctcaagcaatcctcctgcctcaacctccccagtagctgggactacaggtgcacaccaacatacctggctgatttttatattttttgtagagacagagttttgccatgttgctcaggctgatctcaaactcttgagctcaagccatctgtctgcctcagcctctcgaagtgctgggattacaggcctgagccaccacacctggccAGTAATTTCTTAATCCTACCTCCCTGCTTCTATTGCCTAGCCCGTACATTTGAGGCTTCCATGGAGCTTTCTGTGGTACTGAAACACTTGGAGTGAACTGCAAACTTGGAGTGAACTACATCCAACCTTTCTAAGGTGGCTGGGGAAAATTCTTGTACAGCAAGTTGGGACAAAATAGCCATATAGATACTAGGCAGAAAAATTGGGATATTAGAGGAAATACATGATTTCCATTTATGGAGTGCTACATGTTTGCAAAATGTATTTCTGCTTTTCATCTTCTTGACATCTGAATATTAAAAGCAGTTGTTGATAATTTCATATAATAAATTGAGACATATCATTA

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