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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SNRPCP13
Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chr6). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr15:80207711-80207979  UCSC
Strand +
Parental Sequence XM_009451078.3
Parental seq. overlap 208 bp
Parental seq. overlap (%) 25.5%
Genomic Region Intergenic
Retrocopy Summary SNRPCP13, located on chr15:80207711-80207979, is a retrocopy of the parental gene SNRPC. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SNRPC
Full Name small nuclear ribonucleoprotein polypeptide C
Also known as -
Coordinate chr6:34260299-34277019
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SNRPCP18
Bonobo Pan paniscus SNRPCP10
Gorilla Gorilla gorilla SNRPCP11
Orangutan Pongo abelii SNRPCP6
Green monkey Chlorocebus sabaeus SNRPCP6
Crab-eating macaque Macaca fascicularis SNRPCP4
Rhesus Macaca mulatta SNRPCP4
Baboon Papio anubis SNRPCP4
Golden snub-nosed monkey Rhinopithecus roxellana SNRPCP3
Marmoset Callithrix jacchus SNRPCP8
Gibbon Nomascus leucogenys Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SNRPCP13
CCAGAAAGGGATGGAAGAGCAGGCTCCGAGCCTGATGCACAGGACAACGGCTGCATTTCAACAAGGAAGGACAtGCAGGGGCAGGGATCCCACTCCCCGCAGTGCCCAGGTCCTCCTCGCCACCCTGGTGTGATGCCAGCACCCTCTATGGGGGGTCCTCCTATGATGCCAGTGACAGGCCCACCTCCTCCTGAGGGTGATGCCATGGGACCTGCTCCTGGAATGAGGCCACCCATGGGA
>XM_009451078.3
CAGGAGCGGAGAGCGGGTTCTGGTTTCTGAAACCTCGAGGGATGGGAGAGTATCTTGGCCGGGTGGACGGAGGCAGGGAGATGGAGAGTGCTAGACACCCCATTTTAGAGTGCAGGTTTTATTGTGACTACTGCGATACATACCTCACCCATGACTCTCCATCTGTGAGAAAGACACACTGCAGTGGAAGGAAACACAAAGAGAATGTGAAAGACTATTATCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGATTGACAAAACAACGGCTGCATTTCAACAAGGAAAGATAcctcctactccattctctgctcctcctcctGCAGGGGCGATGATACCACCTCCCCCCAGCCTTCCGGGTCCTCCTCGCCCTGGTATGATGCCCGCACCCCATATGGGGGGCCCTCCCATGATGCCAATGATGGGCCCTCCTCCTCCTGGGATGATGCCAGTGGGACCTGCTCCTGGAATGAGGCCACCCATGGGAGGCCATATGCCAATGATGCCTGGGCCCCCAATGATGAGACCTCCTGCCCGTCCCATGATGGTGCCCACTCGGCCCGGAATGACTCGACCAGACAGATAAGGATAGAGGGGAGGCCTTATTGTATCGGTTTTATATTACCTGTTCTGCTTCACCAGGAGATCATGCTGCTGTGATACTGAGTTTTCTAAACAGCATAAGGAAGACTTGCTCCCCTGTCCTATGAAAGAGAATAGTTTTGGAGGGGAGAAGTGGGACAAAAAAGATGCAGTTTTCCTTTGTATTGGGAAATGTGAAAATAAAATTGTCAACTCTTTCAGTTAAAA

Publications

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