Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name TPT1P12
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr13). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr9:90359587-90360390  UCSC
Strand -
Parental Sequence NM_001098546.2
Parental seq. overlap 721 bp
Parental seq. overlap (%) 85.7%
Genomic Region Intergenic
Retrocopy Summary TPT1P12, located on chr9:90359587-90360390, is a retrocopy of the parental gene TPT1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name TPT1
Full Name N/A
Also known as -
Coordinate chr13:26325621-26330053
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens TPT1P9
Bonobo Pan paniscus TPT1P12
Gorilla Gorilla gorilla TPT1P10
Orangutan Pongo abelii TPT1P11
Green monkey Chlorocebus sabaeus TPT1P10
Crab-eating macaque Macaca fascicularis TPT1P17
Rhesus Macaca mulatta TPT1P17
Baboon Papio anubis TPT1P16
Golden snub-nosed monkey Rhinopithecus roxellana TPT1P19
Marmoset Callithrix jacchus LOC100413585P1
Gibbon Nomascus leucogenys Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>TPT1P12
AGCGCCACCCTGGCTGCACCACACTCGCTTGGAGCTTCTGGCTGCTGCTAAGCTAGTGCTGCCGTAGTCTCCCTTCAGCCGCCATCATGATTATCTACCAGGACCTCATCAGTCACAATGAGATGTTCTCCGACATCTAGAAGATCTGGGAGATTGCGGACGGGCTGTGCTGGGAGGTGGTGGGGAAAATGGTCAGTAGGACAGAAGGTAACAATGATGACTCGCTCATTGGTGGAAATGTCTCCGCTGAAGGCCCTGAGAGTGAAGGTACCGAAAGCACAGTAATCACTGCTGTCGATGTTGTCATGAACCATCACCTGCAGGAAACAAGTTTCACAAAAGAAGCCTACAAGAAGTACATCAAAGATTACATGAAATCAATCAAAGGCAAACTTGAAGAACTGAGACCAGAAAGAGTAAAACCTTTTATGACAGGGGCTGCAGAACAAATCAAGCACATCCTTGCTAATTTCAAAAACTACCAGTTCTTTATTGGTGAAAACATGAATCCAGATGGCATGGTTGCTCTACTGGACTACGGTGAGGATGGTGTGACCCCATATATGATTTCCTTTAGGAATGGTTTAGAAACGGAAAAATGTTAACAAATTTGGCAATTAGTTTGGATCTATTACCTGTCATCATAACTCGCTTCTAATTGTCATCCACACAACACCAGGACCTAAGACAAATGGGACTAATATCATCTTGAGCTCTTCATTTATTTTTACCATAATTTATTCGGAGTGGAGGCATTGTTTTTAAGAAAAACATGTT
>NM_001098546.2
TTTTCCGCCCGCTCCCCCCTCCCCCCGAGCGCTGCTCCGGCTGCACCGCGCTCGCTTCGAGTTTCAGGCTCGTGCTAAGCTAGCGCCGTCGTCGTCTCCCTTCAGTCGCCATCATGATTATCTACCGGGACCTCATCAGCCACGATGAGATGTTCTCCGACATCTACAAGATCCGGGAGATCGCGGACGGGTTGTGCCTGGAGGTGGAGGGGAAGATGGTCAGTAGGACAGAAGGTAACATTGATGACTCGCTCATTGGTGGAAATGCCTCCGCTGAAGGCCCCGAGGGCGAAGGTACCGAAAGCACAGTAATCACTGGTGTCGATATTGTCATGAACCATCACCTGCAGGAAACAAGTTTCACAAAAGAAGCCTACAAGAAGTACATCAAAGATTACATGAAATCAATCAAAGGGAAACTTGAAGAACAGAGACCAGAAAGAGTAAAACCTTTTATGACAGGGGCTGCAGAACAAATCAAGCACATCCTTGCTAATTTCAAAAACTACCAGTTCTTTATTGGTGAAAACATGAATCCAGATGGCATGGTTGCTCTATTGGACTACCGTGAGGATGGTGTGACCCCATATATGATTTTCTTTAAGGATGGTTTAGAAATGGAAAAATGTTAACAAATTTGGCAATTATTTTGGATCTATCACCTGTCATCATAACTGGCTTCTGCTTGTCATCCACACAACACCAGGACTTAAGACAAATGGGACTGATGTCATCTTGAGCTCTTCATTTATTTTGACTGTGATTTATTTGGAGTGGAGGCATTGTTTTTAAGAAAAACATGTCATGTAGGTTGTCTAAAAATAAAATGCATTTAAACTCA

Publications

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