Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name TUBA8P1
Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr22). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr12:39822473-39823375  UCSC
Strand -
Parental Sequence NM_001280288.1
Parental seq. overlap 758 bp
Parental seq. overlap (%) 34.8%
Genomic Region Intergenic
Retrocopy Summary TUBA8P1, located on chr12:39822473-39823375, is a retrocopy of the parental gene TUBA8. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name TUBA8
Full Name tubulin alpha 8
Also known as -
Coordinate chr22:2566595-2588081
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Bonobo Pan paniscus TUBA8P1
Gorilla Gorilla gorilla LOC101128742P1
Baboon Papio anubis TUBA8P2
Golden snub-nosed monkey Rhinopithecus roxellana TUBA8P1
Marmoset Callithrix jacchus TUBA8P1
Mouse lemur Microcebus murinus TUBA8P1
Cow Bos taurus LOC100295712P2
Sheep Ovis aries LOC101108295P2
Dolphin Tursiops truncatus TUBA8P3
Dog Canis familiaris LOC100855995P2
Greater mouse-eared bat Myotis myotis TUBA4AP1
Egyptian rousette Rousettus aegyptiacus TUBA8P2
Sloth Choloepus didactylus LOC119526134P6
Human Homo sapiens Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Horse Equus caballus Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>TUBA8P1
CAGGGCTTCTTGGTTTTCCACAGCTTTGGTGGGGGAACTGGTTCTGGGTTCACCTCCCTGCTCATGGAACGTCTCTCAGTTGATTATGGCAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCGCCCCAGGTTTCCACAGCTGTAGTTGAGCCCTACAACTCCATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTCGTAGAAACCTCGATATCGAGCGCCCAACCTACACTAACCTTAACCGCCTTATTAGCCAGATTGTGTCCTCCATCACTGCTTCCCTGAGATTTGATGGAGCCCTGAATGTTGACCTGACAGAATTCCAGACCAACCTGGTGCCCTACCCCCGCATCCACTTCCCTCTGGCCACATATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTTACTGTAGCAGAGATCACCAATGCTTGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATGGCTTGCTGCCTGTTGTACCGTGGTGACGTGGTTCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGTACCATCCAGTTTGTGGATTGGTGCCCCACTGGCTTCAAGGTTGGCATTAATTACCAGCCTCCCACTGTGGTGCCTGGCGGAGACCTGGCCAAGGTACAGAGAGCTGTGTGCATGCTGAGCAACACCACAGCTGTTGCCGAGGCCTGGGCTCGCCTGGACCACAAGTTTGACCTGATGTATGCCAAGCGTGCCTTTGTTCACTGGTACGTGGGTGAGGGGATGGAGGAAGGCGAGTTTTCAGAGGCCCGTGAGGACATGGCTGCCCTTGAGAAGGATTATGAG
>NM_001280288.1
AGATTGCCGCATAGGTAAGCAGAAATCTGCTCTCATTCTCTTTTGGCCACAAGCAGGCATGTCTTAGGAGCGCAAGGGTAGGAAGATCTCTAACTGTGCTTGGAAACTTGGGAAGTTACCATGTCTGGCTAAAGTGGTATTGTCTTAAGGAAAACCTATGAATTTGCCTGCGTTGGCTTGGTGCTGAGGAAAGTGGAAGAGAGAGGCTGGGGTACACCTTTCAACATGAATGGAACTGACCACTGGAGGGAAAGAACAAGAAACAGCAGTGAGAACAAGGAACAAAGACCATCCAGCCCATCACCCACCTGGGGGGAAGTGAGGGGAGATGGGCAGGGTGACAACGTGGCCAACATCTAAAGTGTGAAGAGGGGCTTTTACCAAGTGCCCACCCCGTCCGGAGCAGGGGGCAACCAACAGCATCTGGCGGGTCTTACTACTGGGCAGAGGCAGGGGAACCCTGCTGGGGTCACGAAGGCTGCTCTCGCCGGCGGTGTTGGAACGTGGACACGTGCGCTTTGGTAATACGGCAGCCTCCCCCGCGGGCGCAGTCCCCGCTGCGAGCGCCCCCGGCTGCTGAGGCGGGACCGAGGACCCGGAGATTTGAGCCGCGGGTGGGCGGGGAGGGGCCTTTGTGACCTGCCCGCCCCTCCCCGGCACTGTGATGCCGGGGGGCAGCTGCGGGCCCGGCGCGCCTGTCCCCGGCGTCCCCTCCTCCCGGTGTGTCACAACGGCGGAGGCGGCTGTATCTGGAGCAGTCGGGGCGGGCAGGCCCAGCTGAGAGGTGCGCGGGCGAGGACAGCGGCAGCGATGCGGGAATGCATATCAGTCCACGTGGGCCAAGCGGGAGTTCAGATTGGCAATGCCTGCTGGGAGCTCTTCTGCCTGGAACACGGCATCCAGGCAGACGGCACTTTTGATGCTCAAGCCAGCAAGATCAACGATGATGACTCCTTCACCACCTTTTTCAGCGAGACTGGCAATGGGAAGCATGTGCCCCGGGCCGTCATGATAGATCTGGAGCCTACTGTAGTGGATGAGGTTCGGGCAGGAACCTACCGCCAGCTCTTCCATCCAGAGCAGCTGATCACAGGAAAGGAGGATGCAGCCAACAACTATGCCCGGGGCCACTACACGGTGGGCAAGGAGAGCATTGACCTGGTGCTGGACCGCATACGGAAGCTGACAGATGCTTGCTCTGGCCTGCAGGGCTTCCTGATTTTCCACAGTTTTGGTGGGGGCACTGGCTCCGGCTTCACTTCTCTGCTGATGGAACGCCTCTCCCTGGATTATGGCAAGAAATCCAAGCTGGAGTTTGCCATCTACCCAGCCCCCCAGGTCTCTACTGCAGTGGTGGAGCCCTACAACTCCATCCTGACCACCCACACCACACTGGAACATTCAGATTGTGCTTTCATGGTGGACAACGAAGCCATCTATGACATCTGCCGCAGGAACCTTGACATCGAGCGCCCTACCTATACCAACCTCAACCGCCTCATCAGTCAGATTGTGTCCTCAATCACTGCTTCTCTCCGCTTTGACGGGGCCCTCAATGTGGACCTCACTGAGTTCCAGACCAACCTGGTGCCCTACCCCCGCATCCACTTCCCGCTGGTCACCTACGCGCCCATCATCTCTGCCGAGAAAGCCTATCACGAACAGCTCTCTGTGGCCGAGATCACCAGCTCCTGCTTTGAGCCCAACAGCCAGATGGTGAAGTGCGACCCGAGACATGGCAAGTACATGGCCTGCTGCATGCTCTACCGGGGCGACGTGGTGCCCAAGGATGTGAATGTCGCTATTGCTGCCATCAAGACCAAGAGGACCATCCAGTTTGTAGACTGGTGTCCCACAGGCTTCAAGGTGGGCATCAACTACCAGCCCCCGACCGTGGTCCCCGGGGGAGACCTGGCCAAGGTGCAGCGGGCCGTCTGCATGCTCAGCAACACCACGGCCATCGCGGAGGCCTGGGCCCGCCTCGACCACAAGTTCGACCTCATGTACGCCAAGCGGGCCTTTGTGCATTGGTATGTGGGAGAGGGGATGGAGGAAGGAGAATTTTCTGAGGCCAGGGAAGACTTAGCTGCCCTGGAGAAGGATTATGAAGAAGTGGGGACTGATTCGTTTGAAGAAGAAAATGAAGGGGAGGAATTTTAAATATATACCTTCCCCTTG

Publications

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