Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name YY1P2
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr4:185967815-185967985  UCSC
Strand +
Parental Sequence XM_009428472.3
Parental seq. overlap 145 bp
Parental seq. overlap (%) 2.1%
Genomic Region Intergenic
Retrocopy Summary YY1P2, located on chr4:185967815-185967985, is a retrocopy of the parental gene YY1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name YY1
Full Name YY1 transcription factor
Also known as -
Coordinate chr14:81182738-81226850
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens YY1P3
Bonobo Pan paniscus YY1P2
Gorilla Gorilla gorilla YY1P2
Orangutan Pongo abelii YY1P2
Gibbon Nomascus leucogenys YY1P1
Green monkey Chlorocebus sabaeus YY1P1
Crab-eating macaque Macaca fascicularis YY1P1
Rhesus Macaca mulatta YY1P1
Baboon Papio anubis YY1P1
Horse Equus caballus YY1P1
Panda Ailuropoda melanoleuca YY1P1
Cat Felis catus YY1P1
Pale spear-nosed bat Phyllostomus discolor YY1P2
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Dog Canis familiaris Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>YY1P2
TGGTCCCCGAGACCACGTCTGTGCGGAATGTGGGAAAGCGTTCGTTGAGAGCTCAAAACTGAAAAGACATTTCCTGGTTCATACTGGAGAGAAGCCGTTTCAGTGCACTTTTGAAGGGTGTGGAAAGCGCTTCTCTCTGGACTTTAATTTGCGTACGCACGTGCGCATCCA
>XM_009428472.3
GAACGGGCGAGTGGCAGCGAGGCGGGGCGGGCTGAGGCCAGCGCGGAAGTCTCGCGAGGCCGGCCCGAGCAGAGTGTGGCGGCGGCGGCGAGATCTGGGCTCGGGTTGAGGAGTTGGTATTTGTGTGGAaggaggcggaggcgcaggaggaagggggaagcggagcgccgacccggagggcgggaggaggCGCGGCCAGGGCGGGCGGTTGCGGCGAGGCGAGGCGGGGAGCCGAGACGAGCAGCGGCCGAGCGAGCGCGGGCGCGGGCGCACCGAGGCGAGGGAGGCGGGGAAGCcccgccgccggcgcggcgcccgccccttcccccgccgcccgccccctctccccccgcccgctcgccgccttcctccctctgccttccttccccacggccggccgcctcctcgcccgcccgcccgcAGCCGAGGAGCCGAGGCCGCCGCGGCCGTGGCGGCGGAGCCCTCAGCCATGGCCTCGGGCGACACCCTCTACATCGCCACGGACGGCTCGGAGATGCCGGCCGAGATCGTGGAGCTGCACGAGATCGAGGTGGAGACCATCCCTGTGGAGACCATCGAGACCACAGTGGTGGGCGAggaggaggaggacgacgacgacgacgaggacggcggcggtggcgaccacggcggcgggggcggccacgggcacgccgGccaccaccaccaccaccatcaccaccaccaccaccCGCCCATGATCGCTCTGCAGCCGCTGGTCACCGACGACCCGACCCAGGTGCACCACCACCAGGAGGTGATCCTGGTGCAGACGCGCGAGGAGGTGGTGGGCGGCGACGACTCGGACGGGCTGCGCGCCGAGGACGGCTTCGAGGATCAGATTCTCATCCCGGTGCCCGCGCCGGCCGGCGGCGACGACGACTACATTGAACAAACGCTGGTCACCGTGGCGGCGGCCGGCAAGAGCGGCGGCGGCGGCTCGTCGTCGTCGGGAGGCGGCCGCGTCAAGAAGGGCGgcggcaagaagagcggcaagaagagTTACCTCAGCGGCGGGGCCGGCGCGGCGGGCGGCGGCGGCGCCGACCCGGGCAACAAGAAGTGGGAGCAGAAGCAGGTGCAGATCAAGACCCTGGAGGGCGAGTTCTCGGTCACCATGTGGTCCTCAGATGAAAAAAAAGATATTGACCATGAGACAGTGGTTGAAGAACAGATCATTGGAGAGAACTCACCTCCTGATTATTCAGAATATATGACAGGAAAGAAACTTCCTCCTGGAGGAATACCTGGCATTGACCTCTCAGATCCCAAACAACTGGCAGAATTTGCTAGAATGAAGCCAAGAAAAATTAAAGAAGATGATGCTCCAAGAACAATAGCTTGCCCTCATAAAGGCTGCACAAAGATGTTCAGGGATAACTCGGCCATGAGAAAACATCTGCACACCCACGGTCCCAGAGTCCACGTCTGTGCAGAATGTGGCAAAGCTTTTGTTGAGAGTTCAAAACTAAAACGACACCAACTGGTTCATACTGGAGAGAAGCCCTTTCAGTGCACGTTCGAAGGCTGTGGGAAACGCTTTTCACTGGACTTCAATTTGCGCACACACGTGCGAATCCATACCGGAGACAGGCCCTATGTGTGCCCCTTCGATGGTTGTAATAAGAAGTTTGCTCAGTCAACTAACCTGAAATCTCACATCTTAACACATGCTAAGGCCAAAAACAACCAGTGAAAAGAAGAGAGAAGACCCTTCTCGACCACGGGAAGCATCTTCCAGAAGTGTGATTGGGAATAAATATGCCTCTCCTTTGTATATTATTTCTAGGAAGAATTTTAAAAATGAATCCTACACACCTAAGGGACATGTTTTGATAAAGTAGTAAAAATTAAAAAAAAAAAAACTTTACTAAGATGACATTGCTAAGATGCTCTATCTTGCTCTGTAATCTCGTTTCAAAAACACAGTGTTTTTGTAAAGTGTGGTCCCAACAGGAGGACAATTCATGAACTTCGCATCAAAAGACAATTCTTTATACAACAGTGCTAAAAATGGGACTTCTTTTCACATTCTTATAAATATGAAGCTCACCTGTTGCTTACAATTTTTTTAATTTTGTATTTTCCAAGTGTGCATATTGTACACTTTTTTGGGGATATGCTTAGTAATGCTATGTGTGATTTTTCTGGAGGTTGATAACTTTGCTTGCAGTAGATTTTCTTTAAAAGAATGGGCAGTTACATGCATACTTCAAAAGTATTTTCCTGTAAAAAAAAAAAGTTATATAGGTTTTGTTTGCTATCTTAATTTTGGTTGTATTCTTTGATGTTAACACATTTTGTATAATTGTATCGTATAGCTGTATTGAATCATGTAGTATCAAATATTAGATGTGATTTAATAGTGTTAATCAATTTAAACCCATTTTAGTCACTTTTTTTTTCCAAAAAAATACTGCCAGATGCTGATGTTCAGTGTAATTTCTTTGCCTGTTCAGTTACAGAAAGTGGTGCTCAGTTGTAGAATGTATTGTACCTTTTAACACCTGATGTGTACATCCCATGTAACAGAAAGGGCAACAATAAAATAGCAATCCTAAAGCAAGAATATGGCAGAACAAGATCTGTAAGCACAGTCTTATTTTCTTTTGTTGTCCAGAATACTTATAATTCTTGAGCCTCCCAGAAATTGGAAGCTAAATAAAGCAACTCAAGTTTCCTTTATTTTGCACTCAGTTACAGTGATTATTGATGAAAGCGATGCATGGATATTTTAATACTTCCTACATGGCCTGACTTCTGAAAGAGAGTAGGTAACAGGCATCCCGAGTTCAGGAACTACCTCAGAACACCCCAGGCCAGGTTGGTCGTAGGCTGTGATTTTAGCCCCCGGCAAGTGTGAGTGAAGCATCTGTACCACCGCGCAGGCTGAGCGCCTGCGCAGGGTAAGGTGCCACCTGGCAGTGGGGCACACAGAGGGAAGACCAGGCCTGTCCATCAGCCGGCTGCCTTCAGAGGCAGCTCCAGCAGGGCCTTGGCTTGTCTGACAGGAAATGCTTGTGGTCGTTGGTTATTTGGTTTGAGAGCCCTTGTTCCTCCATCTAGTGGAGTCCTTATTAAATGCTAGCAATGTGGCAATTGAGTGCCAGTAGCTTCATTTCATGTTTCTAAATGGACACTGGGTGCAAATCGGCAAGGTGATTAGATTATTAGAAAATTGTGCTCAATGAGTACCTCTCACATTGTAACCTCTTAAATGTACGATTATAATGTTGGATCTTAGGTCAAATAACAGACTTGAGAATACTTTATAAACTGCCATGATACAGCAAAATCTCATTTATTCAAAGTGCAAACATACTGTGTGTCTTTCTGTTTTGTGTATGCTTGACTGCAAGATAAATGACAAACTAGCTAATATCCGAGATTTATTTACAAACGGCCAGGGACCCCATCAGGTGAAACACATAGCCCATTGTCTTAGAGcttctccatcggtcctgtacaggaggattggtgacctactaacagtgaccctgtggctctgtggaattttgaagtgccttttgtgaatcatgaatgaaacatttaactTGAGACCCTTAAAAAAATTCATCCAGAATCTGTTACCCCTTGGGTAGTTTGATGGAACTGAGTTAAGCAGAAGACCCCAGCTGTTTTCTGGGTAAGCCAGGCTTTGCTGTATCTGGCAGTCAGGAGAGAGGTCAGCCCATGGTGGAGGTCTTCAGTGCCGAGGGCTCGGATGAGAACGTGTAGTTCTTTGACTTGGACCTGGGCAGCGTCTTCTATGGATGCCTGCCTTGTGAGCACCCACACCTTCCCTCCCCACTGTCGGGTTGAGTAGCCCCAGCGTGGCTGTGTTAGGAGTCCTTTGCCCAACATTGTGCTGCACTGGAGCCTGGCCCTGGCACTGTCCTCAGGACCCTGCCCAAGGGCCCACCGCAGAGCACACCTATGCTATGGGGAGCCCTGCTGGCAGCCCCGAGAGCCATGCCATGGCCTGCAGGAGCCAGGCTCCTGTGTGGATGAAGTCCCTCTTCCTCTGTGCCTTGATCCCTTGGTCATCTCTTCCGTCCTTTCCTGTCTCTGAAATAGTCATCACTCCCCTTGACTCTCTCTGTTCACGTCTTCTCAGTCTGCAGAGTTAACTTCTGTAAGGAGTTTAATCTGGGGTTCCAAGAAAACAAGTTCCTTGTTAACATAGCACTGACTTTGCAACAATAGAAAACTAACAAATGAGCAACAATATAAAGAGTAGAGGTAGTTCTCATTGGGTGTAACTTCAACCCATTCTGCTTGTGGTTAGAATTTATAATTTTGCTAACGATGTAATTTACTAAGGTTTGAAATGGTGTTCTAACAGTGAGTCCATTGTCTTGAGGATTAATCTGATTTATAAGTAATACTGATAGACATATTTTCGTACATCTGAGCAGAAATAAATGCATGTTTCTAGCATATGTAATATAAAAACTCCAGAGGATAAGTTTACACTTAACAAGATGTTGTTTTCTATTTTTGAATTTCTTATTATTTCCCCCTTTTTGGTAGTGGGGTTGAGAGGGGGAGCATACTATTTGTATAAAGAACTGTCACCCCAGAGTGACATTTATTTTCCAAGATGACCCTGAACTCATGCTGTTGGTTTCATATGGTGTTTGTGTGCTTTGCCTAGATTCAAGGCCTGAGGATTTGAGGAAAATCGGGATTTTTTTTTTCCTATTTGGTTTTCATGTAAAAGTTCTAAATGTCACTTATTTTGCTAAATAAGACCCTTTCACAGGATAGTGTGCACAATACCTATCCGTGTTTCCAAGCAGAGTTCAAGTTCATGTCTTCACAAGTAGATGAGAGTCACTTCCAGTTGGGGGAAGCCCGCCTGAGCAGTGTTTTGAGAGTGCGTACATTGGAGAACTGCCCCACGTCCGTTTGCACTCTGCCTTGCAAAACTTACTGTGGAGACGTGCCCCAGACTGGTCTCAGACCAGAGTTTGTGGCACAGGAAAACCTGGCCCCCTAAAAGAAGTTTTGGAATTGGAAACCTGATAATTtcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcaccactgcactccagcctgggtgacagagcaagactccgtctccaaaaaaaaaaaaaaggaaaCCTGATAATTCTACTCAcctcccaccgaccccccgcccccccccccccccccccACTATAGGCAGAGAGAGTTGATCACTTCCAGGGTCTCTGACTTCTGTGACCTGGAAATCAGCCTGGCTTGGGAAATTCATGTTGTTGATCTTTAATTATTTAATTATTCTTTAATAATCCTTCTATTTTCTTGACATCTGACCCCCAGCAAGAGTAAGGATCCCAGAGGTCAAAACAGTGGTGAGAGCCAAGCTGCTCACAGACACCCACTTGATGCCACAGCCATGCCATGAGGCTTCCTCCCAGCTGCTCTGCTGGCTTGCTGAAGCCAGCTCTGAGTCACAGGGTTGCCTTGGACCCTCGGCTGTAGGGGGCACCTGTCTGGCTCCGGGCCCTTTGTCCTGGATACACTGACAGTAATGTGAGCGCAGCACTTCAGAGTTCAGGCCCAGCAGGTCCTGGCAAGTGCATTCCACCTGAACTTTTAACCCAAGCGGTGGGGAAGGAAGCCAAAACTCCAAGCTGCACTTTCTTGGGGTTCTGGCCATGCACTTCTTAGCCTTCTCTCTGACTTTACAGGACAAAAGGTACCCCACGCCTTCAGAATCATGCTTACCTGCACGGCAGCATCTGACTGGATGGCTGGCTAGGTCTCATCCACCCCAAATTACTGACCCTTGATTTATGTTGTTACTGCTCAGGTTATGCTCAGATGCCCTGGTTGCCTGAAGATGGTTTAAGTGCAGGCCCTTCAGACAAGTCACGTCAGGCAAGAGAGGGCTGGCCTCTAACCCACAAGAGGGCAGATTTGTGGCCAAGAGGCTTCCTGGCATCCACCCCCAGGCCCAAGGGATCAGTGTGGTGCCAGAGAGGATCTTTAAGCTGGGACTGTACTGAGGCTTGATGGGAAGTATGGGCAGCATGTACTTGACACGTTATCACCCAGTCCCCTTGTAAAATCTGGAACGGAGTGTTTAAGCTGAGCGTTAGCATCAGGTCAGCAGGCAAAGCAAACCTCCCACAAACTGGGTGCCGTAAGGCGGGAGGTGACACAGGGAGAGCTTCGTCCTGGCCGAGCAGGCACCCAGCCCCATGTCCCCCGCCAGCATTCTGGATGTCAGAGGAGGGTGCGTGTGATGGCGTCACATTCATCTGAAGCACACTGATTGTTTTTCCACAAGGTGGCAAGTTTGATCAAATTGACCGCTTTTCATGAGACACCCAGATGCTGTAAAAAAAAAAAAAAAACAGCACTGGGATGTGTTGAGGAGGGGGCAGTTtgctgtgctctgttctgtctgctgctctctctgGGGGCCGCACAATGTCCGCACACATCACGGAGGGGAGAAAGGCATCAGTACCAAACGGAACAACCTCTTTTTTCTACAATGTCCATACCCGGACATGTGAGGCTCTATTATCAACAGGTGGTGAGAAAAATTCTGTTTTTATTCACTTTCTGGTAACTTCTGTAGGCCCTGGCTCAAGGACTTAGCATTTCGTCTCATGTACATCTTTTTCTTAAGTGTTCTTTGCCATTTCTGGAATTGTCCTTGGTTTTTCCTTAGCTCATAGGTCATAGATGCAGAAATATAGTATTTAAGGCATCCGCATCCAGCATCAGATGGCTTTGCATCCAGAAAAACATTGATAACTCAGTTTGAAGCACCAAGCATGTGTAATATGGCTCTATACAATATAATAAATGCATAATGTTAAGCTTT

Publications

PMID - Link Title