Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ARL5AP4
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr2B). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chrX:108195183-108197583  UCSC
Strand -
Parental Sequence XM_003832730.5
Parental seq. overlap 1379 bp
Parental seq. overlap (%) 25.9%
Genomic Region Intergenic
Retrocopy Summary ARL5AP4, located on chrX:108195183-108197583, is a retrocopy of the parental gene ARL5A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ARL5A
Full Name N/A
Also known as -
Coordinate chr2B:39103816-39133495
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ARL5AP1
Chimpanzee Pan troglodytes ARL5AP3
Gorilla Gorilla gorilla ARL5AP5
Orangutan Pongo abelii ARL5AP2
Gibbon Nomascus leucogenys ARL5AP2
Crab-eating macaque Macaca fascicularis ARL5AP4
Rhesus Macaca mulatta ARL5AP4
Baboon Papio anubis ARL5AP3
Golden snub-nosed monkey Rhinopithecus roxellana ARL5AP3
Marmoset Callithrix jacchus ARL5AP7
Green monkey Chlorocebus sabaeus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ARL5AP4
CAGCAGCAGAGGCGGAGACTCTGGCGCGGCTCTCTCCTCCCACTCAGCTTGAGACAGGGGCGGTCAGGCAGTCCAGGGGGATTGGAGGGGGGTTTGCTTCCCGAGAGTGGGAATTCACCAAACATGGAGACTGTTCAGTCACCAGGAGCACAAAGTTATTATCGTGGGACTGGATAACGCAGGGAAAACTATCATTCTTTTCAAATTTTCTGTGAGTGAAGTTGTACATAACTCCCGTACAATAGGAAGTAATGTAAAGCAGACAGTGATTAATAATACACGTTTCTTACTGTGGAATATTGGTGGTCAAGAGTCTCTTCTTTCTTTCTGGAATGTTTACTATACTAACACGGAGTTTGTAATAGTTGTGTGGACGGTACAGACAGGATTTCTGTAACTAGAGAAGAACACTGTAAAATGTTAGCAAATGAGGACTTAAGAAAAACTGGATTGCTGATTTTTGCTAATTAACAAGATGTTCAAGAATGCATGACTGTAGCGGAAATCTCCCAGTTTTTTGACGCTAACTTCTATTAAAGGTAGGATTTGAATGGATGATGTCACCGTTTAAGATCAAATGATTTTTGCTGACGTCTTCTCATAGACTTGGTATATACGAAGTGCTGACCTTTATGAAAGCTGCAAAAATTAATAGTTTAAATATATTTAATAATAAACCTATTTAAGCTTTTTCTATAAGAAGAAAAATTAAGACTACTTACTTGAAAGCAGATAAGTCTCACCTTCCAATTTGCTTTCTCATTAGTTCCCTCAAAAGTAAGTTATTAAAGCTGTGATTGACATTTTTCTCATAATGAATCCTCTCAGGACATTGTGTAGCCTGTGGTAAATACAAAGGGAGAGGAAGACATTTTGAATTTTAAGAGCTTTATTATCAGTATAGCCTTCTTTAGTTGAATGTTGTTCTCTTCTTGTTCTATTAAGTCAAAATGCAAATCAGTACAGATAGCATTTCCAATATTTTAAAATGTAATGCTaGTATTTTGCATACAATTGTGTATGTATTGTGTATATACCTCAAATTCAAGTTAATGGCTTTGTTTTACGTTTTAAAGAAGAAAACAACATAAAAATGAATAATACCCTTATTTAAAACCATAATGGGACAAGTACTGGCATTGGTGTTATGTGACATTTTGTACTTTTCTGCTATGTTCGTAGATTGTACTAACCAACTCCCTAAATCATTGACCTGCTGTTAAAACAAAAAAAGAAAAAGGAAAAAGCTTAACATTGTGTACCTATTTTTTTTTGTTGATCAATATCTCACATAGAAACACATAATTCAACTGAGTGAAATATCTATCAAATTCTTAGCTCAGTATTAATGGGCAGAATTGCACAATGAGCAATTACTGGATTATTCCTTTTATTGGTGTTTATTGCATCTAAATTACTGAATAAATTAATTCCTTAATCAATCTTAAATTATGATTAAAATTATCAAGTGAATTCCTCTTAGCAGTTGAAAACTGTTGTATGAAACACGTCTGTCCAGAGAAGTAATACTCTATGAATATTATTAAATAGCTTAGATACAGTCTTTTTAAGTATTAAATTGTATGTCAAGCAGTTAAT
>XM_003832730.5
TCGTCGCCACCGCAGCCGCCCGAGAGGAGCTGGGGGAGGACGGTGGCCCGCGAGGCTCGTCGCAGACAACGCGGCGGCGATGTCCGCAAGCCAGGCGAGTgccgcggcggcagcggcggggccttgcgcgcggcagggcggcCTGGGCTTCGGCCTCCCTCCGGTTCCCTGGAAGCGGGCCCGCGACCAGCGCGGGAGCAGCAGCAGAGGCGGAGGCTCCAGCGCGTCTCTCTCCTCCCCCTCAGCCTGAGCCAGGGGAAGCCAGGCGGCCCGGGTGTCTGGAGGGGGGGGGGTCCGCTGCCCGAGAATGGGAATTCTCTTCACCAGAATATGGAGACTGTTCAATCACCAGGAGCACAAAGTTATCATTGTTGGGCTGGATAATGCAGGGAAAACTACCATTCTTTACCAATTTTCTATGAATGAAGTTGTACATACATCTCCTACAATAGGAAGTAATGTAGAAGAGATAGTGATTAATAATACACGTTTCCTAATGTGGGATATTGGTGGCCAAGAATCTCTTCGTTCTTCCTGGAACACTTACTATACTAACACAGAGTTTGTAATAGTTGTTGTGGACAGTACAGACAGAGAGAGGATTTCTGTAACTAGAGAAGAACTCTATAAAATGTTAGCGCATGAGGACCTAAGAAAAGCTGGATTGCTGATTTTTGCTAATAAACAAGATGTTAAAGAATGCATGACTGTAGCAGAAATCTCCCAGTTTTTGAAGCTAACTTCTATTAAAGATCACCAGTGGCATATCCAGGCATGCTGTGCTCTAACTGGCGAGGGATTGTGCCAAGGACTTGAATGGATGATGTCACGACTTAAGATTAGATGATCTCTACTGACCTCTTCTCATAGATTTTGTATAAATGAAGTGCTGGACTTTACCTGAAAGCTGCAAAAATTAATGGTTTAGATATATTTATAATAAACTGATTTAAACTTTTTCTATAAGAAGAAAAATTAAGACCACTTATTTGAAAACAAAGATGAAGTCTCACCTTCCAGTTTGCTTTCTCATTAGTTTTTTCCAAAGTAAGTTATTGAAGCTGTGATTGACATTTTTCTCATAATGAATCCTCTCAGGACATTGTGTAGCCTATGGTAAGTACAAAGGGAGAGGAAGACATTTTGAATTTTAAGAGCTTTATTATCAGTTTAACCCTCCCTAGTTGAATGTTATTTTCTTCTTGTTCCATTAAGTCAAAATACAAATCAGCACAGATATTCGAATGTTTCCAATATTTTAAAATGTAATGTTACTTATGAAAAGTATTTTGCTTAAGGTTGTGTGTCTATTGTGTATATACCTCAAGTTCAAGTTAATGGCATTGATTTATGTTCCAGACAAAAATAACACAAATAATAATATCCTTCGTTATAACCACAATGAGATAAGTATTGGCATTAGTGTTCAGTGCCATTTTATACTTTCTCTCTGTGTTCTCTGTATTGTACTAACCAACCTCCCAAATCGCTGAGCTGCTCGTTTAAAAAAAAGGAAAAGGAAAAAGCATGACATTGTGTATCGATTTGTTGTTGTTGACCAAAATCACACACATGGAAACATGTAATTCAACAGAGTGGGAAAGCTAGCAGATTCTTGGCTTAGTATTACTAATAGGCAGGATTGTACAATGAGCAACTATCAGATTATTCCTTTCAGTGGTTCTTATGGCATCTAAATTACTGAATAAATTATTAATCCATTAATCAGTGAATCAAATTATGATTAAAATTATCAAATGAATGCTCAGCATTAATTGAAAACTGTTCTGTGAAACATGTCTACCCAGAAATGTAGCATTCTATAAATGCTATTAAACAACTTAGCTATATTATTTTTAAGTATTAAATTATATGTCAAGCAGTTAAAGTGAATTTCAGAGTAAAAGTAAGGCATGTTTCTGAGCAACACTGATAATTTCTTAATTTGCAAATTTCTTCTTATTTTGGTACTTGGAATATAGTGTGAGATTTTTTATTTCTAAATTTTGTTGTATCTTCTATTACATAAATGCATTGACAATTATAAAATGCAAGTGTTTTTTGAATGATTTTAAGAATTTGGCTTAAAAATTGATTGATACAACGTATTATTTGTACTAAGAAGTAACTTGACCCAAAACACCTTTTATGTTTGCTTAGGGTATATTTTTTCAGTGTCTGAAAGTCAAAGGTATTCCTGTCACAACTGTAAACAAACTTATCCTAAATGTGTTAAAACATATTCTTGGGTACTCTATTTATGTATCTTTCATGCCTTGAAAATCTGAAGGTTAATCCAAACTCACATGTTTTAGCATATTTGAGAAAAAAAAACTACCTTCAATATCAGCCTTTTAAATTTCATGAAGATTTTGGTGAGGAATAATAGTATATACTTTAAGTATTGACAAAACTTTGAAAGTTTCTTTCTTTAAAATGGGAAATACTCAATATCTAAATCCAGGTCAGGCATGGGAGATCAGtatttaacattggatgttttatgttttatatttataatgttcaaaatgcaagcataacatttaatatttGTCCACATGGTTTTACAAAAGTAAATCTTAAATTACTAAGCTTTTCCCATATGTTCTCATACTTTCTCAAATCACTATAAAGAATTACTTGTTGTCTATTAAAAATCTCCTTTACGGTTTCGCCAGACAAATATTATGTGATGTAGCCCAGAAAATCCACACCTTTTGTCCTTTTTATTTTTTAATTTGAATAATCATGTGCTTAGTCCCTTGGATTACTGCCACATCAGTTTAACACGATATCAGCACATTCCCTTGTCATCATCAAGGTGTTGGCTCAGATTTATTCTTAATTGGATGTTTAAAGCATGTACTACCTTGTTACAGTTGGTTTAGTGTAGTGGATTATTGACATGACATCATGAGAAGATGTGTAATTTTATACCACATTTATAAAACATGATTTTGTTTTCTACCTTTCAAGGTAAACATTAAAAATAAGGTGGTACTTGTGTACTTGTACATAAAACCAAAATTATAGTTGGGAAAAAAATAAATTTATATATGAAAATGTCAAAATCATTTTAAAAGTATTATTTTCAAATAAGATGGAGAAGCTGGTGAAAAGTCATATTGGCAATTTGTATGTAGTTTAAGTGGAATTAAGCAGAGGGAGatgcttttgggtttttaatatgccacttctgagtgaaaacatctcgtggagtcattgtgttcagctctgagaagaACAAAGATTCATAGTTCTGTACATGTGGCTGGATTTAAATATCCTGTTTTTGATACTAATTTTGAAAGTCATGTAACTTCTTTTGATATCTGGGCAAAAGTAACCATATGCTATAAGCATTTGAATATGTTTAATTTTATCATAATAGCATCTGTAAAAGTACATCTTACACATTATATAGAGGGTTCTTGTTTGAAATTTTCAGTTCTCTTTATCTTCCCAGTACCTCTTGGTCCTCATAATGGGCAAAGGATACAACGAAGGCAGGTTGTATAGGGGTTATAGTGGGGAAGTGGATAGGGGATTCATTTTCTTATATGACATTTTGCCTTAAGAATATAAAAGTGCTTTAGCACTGATGGCTGGCATTTTTAATATAGGCAGTGAAAGTGACTTTAGAAGCATGGGATGAAATAGAGGGAAGAAGAGTTTTTATTTTCTGGCCTTTAAAAAGTGCCTAGTAGGTCATTTGAGACCCAGAGAAATGCACAGAGCTTGAGCAAAGGCATGAAGTCCCTGACATTGTTTTCCTTTTTGTCTCAGCATATAGTATTAAGACGCCTAGAAATAGGACTCTATTGTCCCCTCTTGTATAGGCACCTTACATTTCTTGCTGTCACTACAGCAACCACATACAGTACAGACAACCTCCAAACCTCTTTATATTAGTGTAAACAGAAAATCTATAGACAACTTTCTAGTTTTCTCTGGAGGCATTTTTGGGAATGTACGTGTAATAGGCTCTGCTTTGTATACAGGAGATAATACCACATCATCGGTTATCTCCAAACTCCAGTCTTCTCTCAACTGCCCAGTTGTATCTTGTCATCAATCACTTTTTCAAGGCTGGGTAGAGACAAGTTTCTCCTCGTAACTTTGACCTCTCCCACTCTCCAAATGTAATCTGGACCTCATTGCTTTCAAAGTCAGCTTCCCCATAGCTCAGGTATCCTTTGCTCTCCTGTATCTTCATTTACTATTAGTGAAGAGATCTCTGTCCTGGAGGTTATTCTAAACTTTCTTTGTAACTATTATTATAGACAATGGTTTCCAAACCAGTAGTTTCTATGTAGCTTTTCTAGTTCCTTGCTATCTTCTCACCACTGGCTTGAGGTAGTGATTTGGACTTTGCTCATTAGAGAGCATTATCAGAGATGTGGAGTCCATCAGAAGACCAGCTTGCAGTGTGTATAGCATATAGATGCCAATATTAGAATTCTTTAAATTATATTTAACATTTTCATGCTTCTTAATTTAACTTCACATGTTGGGAAGTAGATTCAGAAAGATAGGAGAAATACCCAGACTCTGCCACTTCCATGAGCTACTAGTTAGGCATGGGCAGGATTAAGTTTTATGTGTATTATCTTCCCACTACCAAGAATGGTTATGTTTCACAGAATACCAGTTCAGTTTGATTTGGAAAAAGATGCCAAACCAAATTTATATGTAGTCTGTAACCTAAGGGCATTCTTGAAACTATTGCCCACATCCCATTTTTTTTTCATGTTTACTTACAAAACAGAGATAAACATTAGATGTCTAAAGGAGTTAGTAATGAAAAGCCTATCCTTAAAAAATAAACCTGTTGAAATGGGCTTTAAAGACATCGAAATAATCACTTGTCATGCATTGACTGTAAATGCAGATAGAGAAATATGTCTTTGAAGCTCCACTTACACAAAAATAAAACTTGTATATCATGCTCCCTCAAAGAATGTGTGATAGATTATTTTAAGACCATGATAATAGAGTAAAAAGGAAAGAAAGCCAGAAATTACAATTTTGGATGCTAAAAAGTAACTTTCTAGTTAACCCTAAAGTCCTGTCAAATTGTGAAGAAATGTTCCAGGATACACTTGGATTAGTTATGCAGTATTTCTTATCAATGTCTAGCCCTTGTGTATTGTTCTGAAAACTAAAGTTTAAATCTTTATGCTGTTGCTTGCTAGATATCCTGTTCTTTGGTAGAAAATTCCCATAGTCTGTACTCAAGAAGTGCCTAAAAATGGATTTGTGTTGATTTTAAGCCCATCTAATAAATTATATGTATTTTCTATGGTA

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