Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name C1QBPP3
Plot displaying the genomic locations of a retrocopy (in chr16) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr16:26599560-26600412  UCSC
Strand -
Parental Sequence XM_003810159.3
Parental seq. overlap 765 bp
Parental seq. overlap (%) 63.7%
Genomic Region Intergenic
Retrocopy Summary C1QBPP3, located on chr16:26599560-26600412, is a retrocopy of the parental gene C1QBP. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name C1QBP
Full Name N/A
Also known as -
Coordinate chr17:5481114-5487482
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes C1QBPP3
Gorilla Gorilla gorilla C1QBPP3
Orangutan Pongo abelii C1QBPP3
Gibbon Nomascus leucogenys C1QBPP1
Green monkey Chlorocebus sabaeus C1QBPP3
Crab-eating macaque Macaca fascicularis C1QBPP4
Rhesus Macaca mulatta C1QBPP4
Baboon Papio anubis C1QBPP4
Golden snub-nosed monkey Rhinopithecus roxellana C1QBPP5
Marmoset Callithrix jacchus C1QBPP5
Human Homo sapiens Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>C1QBPP3
GGAGACATAACTTTTGTTGATTTCCTGAGTGATGAAATTAAGAAGGAAAGGAAAATCCAGAAGCATAAGACCCTCCCTAAGATGTCTGGAGGTTGGGAGCTGGAATTGAATGGTACAGAAGCTAAATTAGTGTGGAAAGTTGCAGGGAAAAAGATTACTGTCACTTTCAACATTAACACAGCATTCCACCAACATTTGACGATGAAAAGGAACTCTCACAAGGGCAGAAGGTTGAAGAACAGGAGCCTCAGTTGACATCAACTCCCAATTTTGTGGTTGGAGTTATAGAGAATGATGGCAAGAAGGCCCTTGGGCTTGACTGTCACTATCCAGAGGATGAGGTTAGACAAGAAGAAAAGACTGAGAGTGACATTTTCTCTATCAGAGAAGTTAGCTTTCAGTCCACTGGCGAGTCTGAATGGAGGACGCTAATAATACACTCAACACAGATTCCCTGGACTGAGCCTTATAAGACCATCTAATGGATTTCTTTGTGGGCCAAGGGGTGGACAACACTTTTGCAGATGAGTTGGTGGAGCTCAGCACAGCCCTGGAGCAACAGGAGTACATTACTTTTCTTGAAGACCTCAAAAGTTTTCTCAAGAGCCAGGAAAGCAGACAAACACTGAAAGCTGTAGCATTATGGCAGGCATTAGCCAGTGAACGAATCCTACTCTGAAGCCAGACACATGTGGTTTGAAACGATAATCCTAATATCATGGGGAAAAATAGCAAATTTAAATAAATTCTTTTGCACTGTCATTTATTATCATTTGTTTTTTCTGTAAAAATCCATTATTTCTAGATTTTTGTATAACATAATAGAAAATAAAATTGGTTTATCTCCTCCAAA
>XM_003810159.3
GGGAAGCGCTTCCGGGCAGGGGCGGGGCTTCCGGCGGCGCGTCAGGTCGCGGGGCGCCTAGGCCTGGGTTGTCCTTTGCATCTGCACGTGTTCGCAGTCGTTTCCGCGATGCTGCCTCTGCTGCGCTGCGTGCCCCGTGTGCTGGGCTCCTCCGTCGCCGGCCTCCGCGCTGCCGCGCCCGCCTCGCCTTTCCGGCAGCTCCTGCAGCCGGCACCCCGGCTGTGCACCCGGCCCTTCGGGCTGCTCAGCGTGCGCGCAGGTTCCGAGCGGCGGCCGGGCCTcctgcggcctcgcggaccctgcgcctgtggctgtggctgcggctcgctgcACACCGACGGAGACAAAGCTTTTGTTGATTTCCTGAGTGATGAAATTAAGGAGGAAAGAAAAATTCAGAAGCATAAAACCCTCCCTAAGATGTCTGGAGGTTGGGAGCTGGAACTGAATGGGACAGAAGCGAAATTAGTGCGGAAAGTTGCCGGGGAAAAAATCACGGTCACTTTCAACATTAACAACAGCATCCCACCAACATTTGATGGTGAGGAGGAACCCTCGCAAGGGCAGAAGGTTGAAGAACAGGAGCCTGAACTGACATCAACTCCCAATTTCGTGGTTGAAGTTATAAAGAATGATGATGGCAAGAAGGCCCTTGTGTTGGACTGTCATTATCCAGAGGATGAGGTTGGACAAGAAGACGAGGCTGAGAGTGACATCTTCTCTATCAGGGAAGTTAGCTTTCAGTCCACTGGCGAGTCTGAATGGAAGGATACTAATTATACACTCAACACAGATTCCTTGGACTGGGCCTTATATGACCACCTAATGGATTTCCTTGCTGACCGAGGGGTGGACAACACTTTTGCAGATGAGTTGGTGGAGCTCAGCACAGCCCTGGAGCACCAGGAGTACATTACTTTTCTTGAAGACCTCAAGAGTTTTGTCAAGAGCCAGTAGAGCAGACAGATGCTGAAAGCCGTAGTTTCATGGCAGGCTTTGGCCAGTGAACAAATCCTACTCTGAAGCTAGACATGTGCTTTGAAATGATTATCATCCTAATATCATGGGGGAAAAATACCAAATTTAAATTATATGTTTTGTGCTCTCATTTATTATCATTTTTTTCTGTACAAATCTATTATTTCTAGATTTTTGTATAACATGATAGACATAAAATTGGTTTATCTCCTCCAA

Publications

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