Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CDKN2AIPNLP3
Plot displaying the genomic locations of a retrocopy (in chr13) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr13:21033655-21034091  UCSC
Strand -
Parental Sequence XM_003846144.3
Parental seq. overlap 371 bp
Parental seq. overlap (%) 29.8%
Genomic Region Intergenic
Retrocopy Summary CDKN2AIPNLP3, located on chr13:21033655-21034091, is a retrocopy of the parental gene CDKN2AIPNL. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CDKN2AIPNL
Full Name N/A
Also known as -
Coordinate chr5:129805422-129814950
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens CDKN2AIPNLP3
Chimpanzee Pan troglodytes CDKN2AIPNLP3
Gorilla Gorilla gorilla CDKN2AIPNLP3
Orangutan Pongo abelii CDKN2AIPNLP3
Gibbon Nomascus leucogenys CDKN2AIPNLP2
Green monkey Chlorocebus sabaeus CDKN2AIPNLP1
Crab-eating macaque Macaca fascicularis CDKN2AIPNLP3
Rhesus Macaca mulatta CDKN2AIPNLP3
Baboon Papio anubis CDKN2AIPNLP3
Golden snub-nosed monkey Rhinopithecus roxellana CDKN2AIPNLP4
Marmoset Callithrix jacchus CDKN2AIPNLP1
Mouse lemur Microcebus murinus CDKN2AIPNLP2
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CDKN2AIPNLP3
AGCTGCTGTCCCTCTCTGTGGTCTGTGCCCACCATCTCCTCCTGGGCTTCAGTTACAATAAAGGCCTTTCAGACAAAGTGATGGAACTGGCTGGTGGGGTTGAAGTGGAAGGCCTGCCACAGTTTACTACCAGAAGTGATTCAATGAATGAGTAGAGCTAAGGCAGAAGACCAATCACACTGTCTTCATCAGCTACAGGGGCTTAGAAAGGAGGCTGGGATGAATGGGATGCCAACCCCAGCAGCTCTCTTAAAAACTCCTGCTACCACCAACAAAGAAAGAGGCAGGTGGAATGAAAAGGAATCTGTCTAGATTGGCTTTTTTTTTTTTTTTAAGTTCTCATTCTTCCAGTAGCTATCACTGTAAAAGTCTGCATGAATATTTATGTATTCATAAATCATGCACTCTAAGATGAGTTCATCAACATTGTAAAAGCT
>XM_003846144.3
GCAGGCGGTGGCGCAGTGCGCGTCGGGAAGGCGGCGGGCTATCCGGTCCTCGGCTGCGGCGGGCACCATGGTCGGTGGCGAGGCGGCTGCCGCAGTGGAGGAGCTGGTTTCGGGGGTGCGGCAGGCGGCCGACTTCGCGGAGCAGTTCCGCTCCTACTCAGAGAGCGAGAAGCAATGGAAGGCCCGCATGGAATTCATCCTGCGCCACCTGCCCGACTACCGCGACCCGCCCGACGGCAGTGGCCGCCTGGACCAGCTGCTCTCCCTCTCCATGGTCTGGGCCAACCATCTCTTCCTAGGCTGCAGTTACAATAAAGACCTTTTAGACAAGGTGATGGAAATGGCCGATGGGATTGAAGTGGAAGACCTGCCACAATTTACTACCAGAAGTGAATTAATGAAAAAGCATCAAAGCTAAGCCAGAAGATTTATCACATTTTCATCATCAGCTACAGGATTAGAAAGGAGGCTGGGATGAATGTGACATAGACCACAGCAGCTCTCTTAAGACTCCTGGTATTACCAACATAAAGAGGCAGGTGGAATGAGAAGGACTCTGTCTAGATTGGCTTTTTTAACATTCTCATTTTCCCAGGAGTTATCACTGTAAAAGTATGCATGGATATTTATGTATTTATAAATCATGCACTCTAAGATGAGTTCATCAACATTGTAAAAGCCCtcttttctgttttcagtttttttttttttcttatcgacaaggtctcactctgtcgcccaggcagaagcacaaaggtgcagtattggctcattgcagcctcgaactcctgggctcaTATTTTCAGGGttttttgttttttgttttgtttttttgagacagagtcttgctctgttgcccaggcaggagtgcagtggcgtgatATATTTTCAGTTTTTAAACGTCAGAATTTTTGTTTAAAATGCCTTTTTTGggctgggcacagtggcttatgcccgtaataatcccagcactttgggaggccgaggtgagcagatcacctgaggttaggagtttgagaccagcctggccaacacgatgaaaccccgtctctactaaaaatacaaacaaaattagctgggcatggtggcagacatctgtaatcccagctactcaggaggctgaagcagaagaactgcttgaacctgggaggtggaggttgcagtgagccaagatagcaccattgcactccatcctgggcgacaaaagtgaaacaccgtctcaaaaaaaa

Publications

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