Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CDRT4P1
Plot displaying the genomic locations of a retrocopy (in chr2A) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr2A:74694353-74695679  UCSC
Strand -
Parental Sequence XM_034942352.1
Parental seq. overlap 1182 bp
Parental seq. overlap (%) 60.4%
Genomic Region Intergenic
Retrocopy Summary CDRT4P1, located on chr2A:74694353-74695679, is a retrocopy of the parental gene CDRT4. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CDRT4
Full Name N/A
Also known as -
Coordinate chr17:36092239-36218700
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens TVP23BP2
Chimpanzee Pan troglodytes TVP23BP1
Gorilla Gorilla gorilla TVP23BP1
Orangutan Pongo abelii TVP23BP1
Gibbon Nomascus leucogenys LOC101176802P4
Crab-eating macaque Macaca fascicularis LOC102138187P6
Rhesus Macaca mulatta TVP23BP6
Baboon Papio anubis TVP23BP5
Golden snub-nosed monkey Rhinopithecus roxellana LOC104659611P6
Marmoset Callithrix jacchus LOC118142759P1
Green monkey Chlorocebus sabaeus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CDRT4P1
GCAGGATAGTAATGATGACACTGCAGATGTTTCACTAATTGATGCAGAAGAGGAGACAACTAATAGACCAAAAAAATCCAAAAATCAGATATTCAGTGGTATCGTTTTTCCACTTATTCTTTCAAGTCAGTGCAATCATTGTCTATCTTCTCTGTGAGTTACTCAGCAGCAGCTTTATTGCCTGTATGATGACAATTATCTTGTTGTTGTCATGTGACTTTTGGGCAGCAAAGAATATCACAGGTAGACTAATGGTTGGCCTATGTCGGTGGAGTCACATTGATGAAGATGGAAAGAACCATTGGGTGTTTGAATCTAGAAAGTCATCCTCTCAAGATAATAAAACTGTGTCAGAAGCTGAATCAAGAATCTTTTGATTGGGACTTATAGTCTGTGCAGTGCTTTGGGTGATATTTGCCTTTAGTGCCTTGTTCTCCTTCAGAGTAAACTGGTTAGCAGTGGTTATCATGGGTATGGTGTTAGCAGATGCCAACCTATATGGTTACATCAGGTGTAAGGTAAGCAGCAGAAATAATTTAACCAACATGGCTACCTCATATCTTGTAAAGCAGTTTTTAAGACAAAACACTGGAGGTGATCGGAGAAGCTTCCTGAATAGAGAAAGCTTATGTGCTTTGTTACATTGGGGAACAACTGAACAGATTCTTGACTCTGAACCTTTTGGAGCTTATTTGATGTCTCAATGAGGAGGATTGGCTTTGTTTTTCCACTTAAAAACTATTTATAAAAAGGAAAAGTAGTTTTCGTATTGTTTTTATTTCCTTTCCAGCAGTTGGGAATGGAAAGTATGTTGGCAGTAGAAACATTGTCAAGATTTGTTCTGTAGTGTATGTACATGTTCCATAGGTATGCACATGGTCATGTAATATCAATATATCCCAAATTAATGAAAGAGTTTATTTATATATATAAAATGGAGACCTTTGCATTTTGATCCATAGAACACAGGAGGATGTTCTTAGTTTATCTCAAAGCTCTATGTGTTTATATATTATTTCTGTAGAGTATTTTCAGAAGTAAGTTTTGCTTTCATGGTAAGAGTGAGTGCTTTGACTTATGTATAAATGAGAAATAATTGTTAGATTTTAATATGCACTTCATGGAGAAATTTCTTAGACAAATGCAAGCAAGTGAAAACAAATTAGGGCTAGTGGTATTAACTAGTTTCTAAAATGTTATTTTTATTTGCAAGAAGTCATTTACTTACAGCCCAGGTAATATGAATGGAATCATCATAGTTTATGTTTAAGGGATACCCAGAGATTCCTGCTGTTCTATTTATTTTACAGAAAAGATGGCCAGATTT
>XM_034942352.1
GGCCCCCGCTCGCCCCGCCCCTGGAGTTGCTCCCTCAAAGCGGAAGTGAGGCCGGACTGAGGCTCTTACAGTGGTCCCTGCTGGCCCTTGGTGACGGGTCGCGTCAGTTCCGACCCGGACCCGTACGCTGCTGCGCTGACGTGGCTCCCGGAAGTAGGGCTGGCGTAGGGCCGCCGTGTTGCCGCAGGATAGTAATGATGACACTAAAGATGTTTCACTGTTTGATGCGGAAGAGGAGACGACTAATAGACCAAGAAAAGCCAAAATCAGACATCCAGTAGCATCGTTTTTCCACTTATTCTTTCGAGTCAGTGCAATCATCGTCTATCTTCTCTGTGAGTTGCTCAGCAGCAGCTTTATTACCTGTATGGTGACAATTATCTTGTTGTTGTCGTGTGACTTTTGGGCAGTGAAGAATGTCACAGGTAGACTAATGGTTGGCCTACGTTGGTGGAATCACATTGATGAAGATGGAAAGAGCCGTTGGGTGTTTGAATCTAGAAAGGAGTCCTCTCAAGAGAATAAAACTGTGTCAGAGGCTGAATCAAGAATCTTTTGGTTGGGACTTATTGCCTGTTCAGTACTGTGGGTGATATTTGCCTTTAGTGCACTCTTCTCCTTCAGAGTAAAGTGGTTGGCGGTGGTTATCATGGGTGTGGTGCTACAAGGTGCCAACCTGTATGGTTACATCAGGTGTAAGGTGCGCAGCAGAAAGAATTTAACCAGCATGGTTACTTCATATTTTGGAAAGCAGTTTTTAAGACAAAACACTGGAGATGATCAGACTTCCTGAATAGAGAAAGCTTATGTGCTTTGTTACATTGGGGAACAACTGAAGAGATTCTTGACTCAACCTTTTAGAGCTTAGTCCATGTTGCAACGAGGAGTATTGGCTTTGTTTTTCCACTTAAAAACTTTATTTATAAAAAGGAAAAGTAGTTTTCATATTAAGTTTTTATTTCCTTTCCAGCAGTTGGGGCTAGAAAGTATATGTTGGCACTAGAAACATTGTCAAGATTTTTTCTGTGGTGTAGGTATGCACATTCCATAGGTATGCACACGGCCATGTAATACCTGTATATCCCAAGTTAATGAAAGTGTTCATTTACATAGGTAATGGAGACCTTTGCATTTTGATCCATAGAACATAGGAGGATGTTCTTAGTCTGTCTCAAAGCTCTATATGTTTACATATTATTTCTGTAGATTGTTTTCAGGAGAAAGTTTTGCTTCTATGGTAAGAGTGAGCACTTTGGCTTATGTATAAGTTAGAAATAATTGTTAGTTTTTAATATGTACTTCATGGGGAAATTTCTTAGACGTATGCAAGCAAGTGAAAACAATTAGGGCCAGTGGTATTAACTACTTTATAAAATTTTATTTTTGTTTGTAAGAAGTCATCTACTTAAGGCCCAGTTAATATAAGTGGAATCATCATAGTTTAAGGAATACCCAGAGATTGCTGCTGTTCTGTTTATTTTACAGAAAGGATAGCTAGATTGAAAGCTCTTCAGTGGACCTTGAGCTAATAGATCTTTTACCACTAAAAGAGCATTATTCTCATGTCATAATGAGAATAATAATTTATATACTTGGCATAATAAATGCCTAAAAGACATTTTATTTTCTGAATCTATTTTTTTCTTGCTATAATGGGGATATTGTAAATTATGCATTTGTATTAATGGTATTTCTTAAAGCAATCTATGTAACTGTAAATTAAACCAATCTACAAACTATTGTAGGCATCTGTAAATTCTGTTGTAGGTATTATAAACTTTGTTGAAGTCTTAATCAGCAGATTATGTTGTGAATATATTTGTACATTGTTAAAATAGTTTTTAAGATTATTTGTTTAATTGAATAAGTGTCTTATTGGAGTGATAGCTTTGAAGGTGCAAAActttatatttgtataaaattctactatttacaaggca

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