Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL23AP35
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr6:105734724-105735078  UCSC
Strand +
Parental Sequence XM_003812691.3
Parental seq. overlap 289 bp
Parental seq. overlap (%) 44%
Genomic Region Intragenic (SEC63)
Retrocopy Summary RPL23AP35, located on chr6:105734724-105735078, is a retrocopy of the parental gene RPL23A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL23A
Full Name N/A
Also known as -
Coordinate chr17:28051502-28055630
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL23AP50
Chimpanzee Pan troglodytes RPL23AP33
Gorilla Gorilla gorilla RPL23AP33
Gibbon Nomascus leucogenys RPL23AP11
Crab-eating macaque Macaca fascicularis RPL23AP24
Rhesus Macaca mulatta RPL23AP24
Golden snub-nosed monkey Rhinopithecus roxellana RPL23AP13
Mouse lemur Microcebus murinus RPL23AP16
Dolphin Tursiops truncatus RPL23AP26
Horse Equus caballus RPL23AP12
Cat Felis catus RPL23AP17
Orangutan Pongo abelii Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Baboon Papio anubis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL23AP35
CCACCCACCTTCCAGCGGCCTAAGACAATGCAGCTCCAAAGGCAGTTCAAATGTCCTAGGAAGAACACCCCCACAAAAAACAAGCTTTATCATTATGCCATTATCAAGTTCCCCTTGACCACTAAGTCAGCCATGAAGAAGACACAACCACATTTGTGTTTACTATGGATGTCAAGGCCAACCAGATCAAACAGGCTGTGAAGAAGCTCTATGACACTGGCATGGCCAAGGTAAACATACTCATCAGGTCTGATGGAGAGAAGAAGGTGTATGTTCAACTGGCTCATAACTTAATGATGTTTTGAATGCTGCCAACACAATTGAGATGATCTAAAATGAGTCCAGCTGGCTAATT
>XM_003812691.3
TAACTACCGTTCCCAGAGGGCGCCGCTCTGCAAATTACCCAATCAGCTCTAAGTACAAAGCATCGCGAGTCTTTAGTGCTCTTTGGCGCTATAAGCCCGTGGGAACGGGCATTGGAGACCCTTTTCACAAGATGGCGCCGAAAGCGAAGAAGGAAGCTCCTGCCCCTCCTAAAGCTGAAGCCAAAGCGAAGGCTTTAAAGGCCAAGAAGGCAGTGTTGAAAGGTGTCCACAGCCACAAAAAGAAGAAGATCCGCACGTCACCCACCTTCCGGCGGCCGAAGACACTGCGACTCCGGAGACAGCCCAAATATCCTCGGAAGAGCGCTCCCAGGAGAAACAAGCTTGACCACTATGCTATCATCAAGTTTCCGCTGACCACTGAGTCTGCCATGAAGAAGATAGAAGACAACAACACACTTGTGTTCATTGTGGATGTTAAAGCCAACAAGCACCAGATTAAACAGGCTGTGAAGAAGCTGTATGACATTGATGTGGCCAAGGTCAACACCCTGATTCGGCCTGATGGAGAGAAGAAGGCATATGTTCGACTGGCTCCTGATTACGATGCTTTGGATGTTGCCAACAAAATTGGGATCATCTAAACTGAGTCCAGCTGCCTAATTCTGAATATATATATATATATCTTTTCACCATA

Publications

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