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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL35AP20
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr10:43089656-43090094  UCSC
Strand +
Parental Sequence XM_003806445.3
Parental seq. overlap 365 bp
Parental seq. overlap (%) 66%
Genomic Region Intragenic (LOC117974457)
Retrocopy Summary RPL35AP20, located on chr10:43089656-43090094, is a retrocopy of the parental gene RPL35A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL35A
Full Name N/A
Also known as -
Coordinate chr3:195386399-195392113
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Green monkey Chlorocebus sabaeus RPL35AP14
Crab-eating macaque Macaca fascicularis RPL35AP18
Rhesus Macaca mulatta RPL35AP18
Baboon Papio anubis LOC101014662P20
Golden snub-nosed monkey Rhinopithecus roxellana RPL35AP30
Marmoset Callithrix jacchus RPL35AP28
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL35AP20
TTTCTCTTTCTGCCAACTTGGAGCCTGTGGAGGCCTGCTGGGAACAGGAGTACTAAAAGGAAGTATGTCTGGAAGGCTGTGGTCCAAGGCCATTTTTGCTCAGTATAAGTGGGGTCTCCAGAACCAAAGACAGCACACAGCTCTTTTTAAAATAGAAGGTGCTTATGCCCAAAATGAAACAGAATTCTATTCGGGCATAAGATGTGCTTATATATACAAAACAAAGAACAACAAAGTGACTCCTGGTGGCAAACCAAACAAAATCAGAGTAATCTAGGGAAAGGTAACTTGGTCCCAGGGAAATAGTGGCATGGTTCATGCCAAATTCTGAAGCAATCTTCCTGCTAAGGCCACTGGACACAGAATCTGTGTGATGCTGTACCCCTCAAGCATTaAGTGGATTTGTGCTCTTG
>XM_003806445.3
AAGATGCCTAAATTGAGGGCGGAGTCGAAAGATGTTTAATCCCACAAGGCCACGCGGCGGGGCCTCGTCCTTCTCTTACCGCCATCTTGGCTCCTGTGGAGGCCTGCTGGGAACGGGACTAACGGGACTTCTAAAAGGAACTATGTCTGGAAGGCTGTGGTCCAAGGCCATTTTTGCTGGCTATAAGCGGGGTCTCCGGAACCAAAGGGAGCACACAGCTCTTCTTAAAATTGAAGGTGTTTACGCCCGAGATGAAACAGAATTCTATTTGGGCAAGAGATGCGCTTATGTATATAAAGCAAAGAACAATACAGTCACTCCTGGCGGCAAACCAAACAAAACCAGAGTCATCTGGGGAAAAGTAACTCGGGCCCATGGAAACAGTGGCATGGTTCGTGCCAAATTCCGAAGCAATCTTCCTGCTAAGGCCATTGGACACAGAATCCGAGTGATGCTGTACCCCTCAAGGATTTAAACTAACGAAAAATCAATAAATAAACGTGGATTTGTGCTCTTGTATTTTTCAGTGGATTAAAAAACTTACTACCTTAAA

Publications

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