Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC101014662P20
Plot displaying the genomic locations of a retrocopy (in chr11) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr11:83821314-83821755  UCSC
Strand +
Parental Sequence XM_003918672.3
Parental seq. overlap 394 bp
Parental seq. overlap (%) 57.9%
Genomic Region Intragenic (LOC116269531)
Retrocopy Summary LOC101014662P20, located on chr11:83821314-83821755, is a retrocopy of the parental gene LOC101014662. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC101014662
Full Name N/A
Also known as RPL35A
Coordinate chr2:193542743-193548510
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL35AP23
Bonobo Pan paniscus RPL35AP20
Gorilla Gorilla gorilla RPL35AP20
Orangutan Pongo abelii RPL35AP21
Gibbon Nomascus leucogenys RPL35AP31
Green monkey Chlorocebus sabaeus RPL35AP14
Crab-eating macaque Macaca fascicularis RPL35AP18
Rhesus Macaca mulatta RPL35AP18
Golden snub-nosed monkey Rhinopithecus roxellana RPL35AP30
Marmoset Callithrix jacchus RPL35AP28
Chimpanzee Pan troglodytes Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC101014662P20
ccTTTCTCTTTCTGCCAACTTGGAGCCTGTGGAGGCCTGCTGGGAACAGAACTTCTAAAAAGCAAATATGTCTGGAAGGCTGTGGTCCAAGGCCATTTTTGCTGAGTATAGGTGGAGTCTCCAGAACCAAAGAGAGCACacagctctttttaaaattgaaggtGTTTATGcccaaaatgaaacagaattctATTTGGGCATAAGATGTGCTTATGTATACAAAGCAAAGAACAACAAAGTGACTCCTGGTggcaaaccaaacaaaaccagagTAATCTATGGAAAGGTAACTTGGTGCCAGGGAAAGAGTGGCATGGTTCACGCCAAATtctgaagcaatcttcctgctaAGGCCATTGGACACAGAATCTGTGTGATGTTGTACCCCTCAAGGATTTAAactaatgaaaagtaaataaataaaagtggatttgtgctcttg
>XM_003918672.3
TGTTCCCAAGTAATACATTTTGCAGCCTACCAAGATGAAAGGACTTAGGAAAATAATTGTAAGAGTGCTCTTGAATGTGGCTTATTTCAGTGCGAAGGCGATTTCCGAGGATTGCTTTTCTGGCGTTTGGAGAAGATGCCTAAATTGAGGGCGGGGTCGAGAGATGTTTAATCCCACAAGGCCACGCGGCGGGGCCTCGTCTTTCTCTTCCCGCCATCTTGGCTCCTGTGGAGgccTGCTGGGAACGGGACTTCTAAAGGGAACTATGTCTGGAAGGCTGTGGTCCAAGGCCATTTTTGCCGGCTATAAGCGGGGTCTCCGGAACCAAAGGGAGCACACAGCTCTTCTTAAAATTGAAGGTGTTTATGCCCGAGATGAAACAGAATTCTATTTGGGCAAGAGATGCGCTTATGTATACAAAGCAAAGAAcaaCACAGTGACTCCAGGCGGCAAACCAAATAAAACCAGAGTCATCTGGGGAAAGGTAACTCGGGCCCATGGAAACAGTGGCATGGTTCGTGCCAAATTCCGAAGCAATCTTCCTGCTAAGGCCATTGGACACAGAATCCGAGTGATGCTGTACCCCTCAAGGATTTAAACTAacgaaaaatcaataaataaacgtGGATTTGTGCTCTTGTATTTTTGTTAAGTGGATTAAAGAACTTACTACCTTAAA

Publications

PMID - Link Title