Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS2P15
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr5:37760497-37761281  UCSC
Strand -
Parental Sequence XM_014341623.3
Parental seq. overlap 699 bp
Parental seq. overlap (%) 72.5%
Genomic Region Intergenic
Retrocopy Summary RPS2P15, located on chr5:37760497-37761281, is a retrocopy of the parental gene RPS2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS2
Full Name N/A
Also known as -
Coordinate chr16:739562-742323
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS2P24
Chimpanzee Pan troglodytes RPS2P14
Gorilla Gorilla gorilla RPS2P39
Orangutan Pongo abelii LOC100444622P18
Gibbon Nomascus leucogenys RPS2P6
Green monkey Chlorocebus sabaeus RPS2P10
Crab-eating macaque Macaca fascicularis RPS2P24
Rhesus Macaca mulatta RPS2P29
Baboon Papio anubis RPS2P26
Golden snub-nosed monkey Rhinopithecus roxellana RPS2P8
Pig Sus scrofa RPS2P3
Sheep Ovis aries RPS2P17
Pale spear-nosed bat Phyllostomus discolor RPS2CP42
Velvety free-tailed bat Molossus molossus RPS2P19
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS2P15
CGGAGCTTGCGGAGGCAAGTTGAGGACAAGGAGTTGGATGCCCATCACCAAGCTGGGCCGTCTGGTCAAGGACATGAAGATGAAATCCCTGGAGATCTATCTCTTCTCCCTGCCCATCAAGGAGTCTGAGATCATTGACTTTTTCCTGGGGGCCTCTCTCAAGGATGAGGTTTTGAAGGTTACGCCAGTGCAGAAGCAGACCCACGCTGGCCAGTGCACCAGGTTCAAGGCGTTTGTTGCCTTGACTACATTGGGGACTACAATGGCCACGTCGGTCTGGGTGTTAAGTGCTCCAAGGAGGTGGCCACTGCCATCCGTGGGGCCATGATCCTGGCCAAGCACTCCATTGTCCCTGTGCTACTGGGGGACAGAGGCTACTGGGGGAACAAGATTGGAAAGCCCCATGCCATCCCTTGCAAGGTGACAGGCCGCTGTGGCTCCGTGCTGGTGACCTCATCCCTGTGCCCAGGAGCACTGGCATCATCTCGGCCCCTGTGCCCAAGAAGCTGCTGATGATGGCTGGTATTGATGACTACTACACCTCAGCCAGGGGCTGCACTGCCACCCTGGGCAACTTCGGCAAGGCCACCTTTCATGCCATCTCAGACCTACAGCTACTTGACCTCCGACCTCTGGAAGGAGACTGTATTCACCAAGTCTCCCTATAAGGAATTCACTGACCACCTTGTCAAGACCCACTCTAGAGTCTCCATGCAAAGGACCCAGGCTCCAGCTGTGGCTACAACATAGAGTTTTTATACAAGAAAAATAAAGTGAATGAAGCT
>XM_014341623.3
TTTCCGACAAAACACCAAATGGCGGATGACGCCGGTGCAGCGGGGGGGCCCGGAGGCCCTGGTGGCCCGGGGATGGGGAACCGCGGTGGCTTCCGCGGAGGTTTCGGCAGTGGCATccggggccggggtcgcggccgtggacggggccggggccgaggccgcggAGCTCGCGGAGGCAAGGCCGAGGATAAGGAGTGGATGCCCGTCACCAAGTTGGGCCGGTTGGTCAAGGACATGAAGATCAAGTCCCTGGAAGAGATCTATCTCTTCTCCCTGCCCATTAAGGAATCAGAGATCATTGATTTCTTCCTGGGGGCCTCTCTCAAGGATGAGGTTTTGAAGATTATGCCAGTGCAGAAGCAGACCCGTGCCGGCCAGCGCACCAGGTTCAAGGCATTTGTTGCTATCGGGGACTACAATGGCCACGTCGGTCTGGGTGTTAAGTGCTCCAAGGAGGTGGCCACCGCCATCCGTGGGGCCATCATCCTGGCCAAGCTCTCCATCGTCCCCGTGCGCAGAGGCTACTGGGGGAACAAGATCGGCAAGCCCCACACTGTCCCTTGCAAGGTGACAGGCCGCTGCGGCTCTGTGCTGGTACGCCTCATCCCTGCACCCAGGGGCACTGGCATCGTCTCCGCACCTGTGCCTAAGAAGCTGCTCATGATGGCTGGTATCGATGACTGCTACACCTCAGCCCGGGGCTGCACTGCCACCCTGGGCAACTTCGCCAAGGCCACCTTTGATGCCATTTCTAAGACCTACAGCTACCTGACCCCCGACCTCTGGAAGGAGACTGTATTTACCAAGTCTCCCTATCAGGAATTCACTGACCACCTCGTCAAGACCCACACCAGAGTCTCCGTGCAGCGGACTCAGGCTCCAGCTGTGGCTACGACATAGGGTTTTTATACAAGAAAAATAAAGTGAATTAAGCGTGTTACTGTT

Publications

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