RCPedia: Rtcs

Summary

Retrocopy Name	RPS2P19	Plot displaying the genomic locations of a retrocopy (in scaffold_m16_p_5) and its respective parental gene (in scaffold_m16_p_3). Each line represents a retrocopy.
Species	Molossus molossus
Coordinates	scaffold_m16_p_5:91218635-91219409 UCSC
Strand	-
Parental Sequence	RPS2_x1
Parental seq. overlap	755 bp
Parental seq. overlap (%)	80.4%
Genomic Region	Intergenic
Retrocopy Summary	RPS2P19, located on scaffold_m16_p_5:91218635-91219409, is a retrocopy of the parental gene RPS2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name	RPS2
Full Name	N/A
Also known as	NULL
Coordinate	scaffold_m16_p_3:120152642-120154922
Strand	+
Gene summary	N/A

Homology

Species	Scientific Name	Retrocopy
Human	Homo sapiens	RPS2P24
Chimpanzee	Pan troglodytes	RPS2P14
Bonobo	Pan paniscus	RPS2P15
Gorilla	Gorilla gorilla	RPS2P39
Orangutan	Pongo abelii	LOC100444622P18
Gibbon	Nomascus leucogenys	RPS2P6
Green monkey	Chlorocebus sabaeus	RPS2P10
Crab-eating macaque	Macaca fascicularis	RPS2P24
Rhesus	Macaca mulatta	RPS2P29
Baboon	Papio anubis	RPS2P26
Golden snub-nosed monkey	Rhinopithecus roxellana	RPS2P8
Sheep	Ovis aries	RPS2P17
Sloth	Choloepus didactylus	RPS2P18
Marmoset	Callithrix jacchus	Without Homology
Mouse lemur	Microcebus murinus	Without Homology
Mouse	Mus musculus	Without Homology
Rat	Rattus norvegicus	Without Homology
Chinese hamster	Cricetulus griseus	Without Homology
Rabbit	Oryctolagus cuniculus	Without Homology
Pig	Sus scrofa	Without Homology
Cow	Bos taurus	Without Homology
Dolphin	Tursiops truncatus	Without Homology
Horse	Equus caballus	Without Homology
Dog	Canis familiaris	Without Homology
Panda	Ailuropoda melanoleuca	Without Homology
Cat	Felis catus	Without Homology
Pale spear-nosed bat	Phyllostomus discolor	Without Homology
Greater mouse-eared bat	Myotis myotis	Without Homology
Kuhl's pipistrelle	Pipistrellus kuhlii	Without Homology
Greater horseshoe bat	Rhinolophus ferrumequinum	Without Homology
Egyptian rousette	Rousettus aegyptiacus	Without Homology
Tasmanian Devil	Sarcophilus harrisii	Without Homology
Opossum	Monodelphis domestica	Without Homology
Platypus	Ornithorhynchus anatinus	Without Homology
Chicken	Gallus gallus	Without Homology
Turkey	Meleagris gallopavo	Without Homology
Zebra Finch	Taeniopygia guttata	Without Homology
Budgerigar	Melopsittacus undulatus	Without Homology
Painted Turtle	Chrysemys picta	Without Homology
Lizard	Anolis Carolinensis	Without Homology
Frog	Xenopus tropicalis	Without Homology
Zebrafish	Danio rerio	Without Homology
Drosophila	Drosophila melanogaster	Without Homology

Expression

Related Sequence

>RPS2P19
GGAGCTCGCGGAGGCAAGGCGGAGGACAAGGAGTGGATCCCCGTCACCAAACTGGGCCGCCTGGTCAAGGACATGAAGATCAAGTCCCTGGAGGAGATCTATCTTTTCTCCCTGCCAATCAAGGAATCCGAGATCATTGACTTTTTCTTGGGGGCATCCCTCAAGGATGAGATTTTGAAGATTATGCCCGTGCAAAAGCAGACGCGTGCTGGCCAGAGGACCTGGTTCAAGGCATTTGTCACCATTGGGGACTACAATGGACATGTTGGTCTGGGTGTTAAGTGCTCGAAGGAAGTAGCCACTGCCATCCGTGGGGCCATCATCCTAGCCAAGCTCTCTATTGTCCCTGTGCGGAGAGGCTACTGGGGGAACAAGATTGACAAAGCCCATACTGTCCCTTGCAAGGTGACTGGCCGCTGTGACTCTGTACTGGTGCGCCTCATCCCTGCCCCCAGGGGCACTGGCATAGTCTCAGCCCCTGTACCCAAGAAGTTGCTGATGATGGCTGGTGTTGATGACTGCTACACCTCGGCCAGGGGCTGCACTGCCACCCTGGGCAACTTTGCCAAGGCCACCTTTGATGCCATCTCTAAGACCTACAGTTATCTCACCCCCGATCTCTGCAAAGAGACTGTGTTCACCAAGTCTCCCCATCAGGAATTCACCGACCATCTTGTAAAGACCCACACCAGAGTTCCTGTGCAGAGGACCCAGGCTCCAGCTGTGGCCACCACATAATTTCATACAAGAAAAAGTGAATAAAGCCTGTTAAT

>RPS2_x1
GGGGGGGGAGGGGGCGCTCTGCGGCGGGAATCCGCGGACATCGGGTTGGACCTGGGCTGGCGTGATCCCAATCTCAGGCGGGAGCGCCATTCCGGGCGACCGCAAATGCCTTACTGACTCTTTTTTGTCGCTTTTCAGCAAATGGCGGATGACGCCGGTGCTGCGGGAGCTCGCGGAGGCAAGGCGGAGGACAAGGAGTGGATCCCCGTCACCAAACTGGGCCGCCTGGTCAAGGACATGAAGATCAAGTCCCTGGAGGAGATCTATCTTTTCTCCCTGCCAATCAAGGAATCCGAGATCATTGACTTTTTCTTGGGGGCATCCCTCAAGGATGAGGTTTTGAAGATTATGCCCGTGCAAAAGCAGACGCGTGCTGGCCAGAGGACCCGGTTCAAGGCATTTGTCGCCATTGGGGACTACAATGGACATGTTGGTCTGGGTGTTAAGTGCTCGAAGGAAGTAGCCACTGCCATCCGTGGGGCCATCATCCTAGCCAAGCTCTCTATTGTCCCTGTGCGGCGAGGCTACTGGGGGAACAAGATTGGCAAGCCCCATACTGTTCCTTGCAAGGTGACTGGCCGCTGTGGCTCTGTACTGGTGCGCCTCATCCCCGCCCCCAGGGGCACTGGCATAGTCTCAGCCCCTGTACCCAAGAAGTTGCTGATGATGGCTGGTATTGACGACTGCTACACCTCGGCCAGGGGCTGCACTGCCACCCTGGGCAACTTTGCCAAGGCCACCTTTGATGCCATCTCTAAGACCTACAGTTATCTCACCCCTGATCTCTGGAAAGAGACTGTGTTCACCAAGTCTCCCTATCAGGAATTCACCGACCATCTTGTAAAGACACACACCAGAGTTTCTGTGCAGAGGACCCAGGCTCCAGCTGTGGCCACCACATAATTTTATACAAGAAAAAGTGAATAAAGCCTGTTAATT

>RPS2_x1 

GGGGGGGGAGGGGGCGCTCTGCGGCGGGAATCCGCGGACATCGGGTTGGACCTGGGCTGGCGTGATCCCAATCTCAGGCGGGAGCGCCATTCCGGGCGACCGCAAATGCCTTACTGACTCTTTTTTGTCGCTTTTCAGCAAATGGCGGATGACGCCGGTGCTGCGGGAGCTCGCGGAGGCAAGGCGGAGGACAAGGAGTGGATCCCCGTCACCAAACTGGGCCGCCTGGTCAAGGACATGAAGATCAAGTCCCTGGAGGAGATCTATCTTTTCTCCCTGCCAATCAAGGAATCCGAGATCATTGACTTTTTCTTGGGGGCATCCCTCAAGGATGAGGTTTTGAAGATTATGCCCGTGCAAAAGCAGACGCGTGCTGGCCAGAGGACCCGGTTCAAGGCATTTGTCGCCATTGGGGACTACAATGGACATGTTGGTCTGGGTGTTAAGTGCTCGAAGGAAGTAGCCACTGCCATCCGTGGGGCCATCATCCTAGCCAAGCTCTCTATTGTCCCTGTGCGGCGAGGCTACTGGGGGAACAAGATTGGCAAGCCCCATACTGTTCCTTGCAAGGTGACTGGCCGCTGTGGCTCTGTACTGGTGCGCCTCATCCCCGCCCCCAGGGGCACTGGCATAGTCTCAGCCCCTGTACCCAAGAAGTTGCTGATGATGGCTGGTATTGACGACTGCTACACCTCGGCCAGGGGCTGCACTGCCACCCTGGGCAACTTTGCCAAGGCCACCTTTGATGCCATCTCTAAGACCTACAGTTATCTCACCCCTGATCTCTGGAAAGAGACTGTGTTCACCAAGTCTCCCTATCAGGAATTCACCGACCATCTTGTAAAGACACACACCAGAGTTTCTGTGCAGAGGACCCAGGCTCCAGCTGTGGCCACCACATAATTTTATACAAGAAAAAGTGAATAAAGCCTGTTAATT

Publications

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