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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS27P8
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr3:47947771-47947971  UCSC
Strand +
Parental Sequence XM_008970323.2
Parental seq. overlap 178 bp
Parental seq. overlap (%) 49.6%
Genomic Region Intragenic (MAP4)
Retrocopy Summary RPS27P8, located on chr3:47947771-47947971, is a retrocopy of the parental gene RPS27. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS27
Full Name N/A
Also known as -
Coordinate chr1:129347650-129349050
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS27P36
Chimpanzee Pan troglodytes RPS27P9
Gorilla Gorilla gorilla RPS27P8
Orangutan Pongo abelii RPS27P9
Gibbon Nomascus leucogenys RPS27P7
Green monkey Chlorocebus sabaeus RPS27P24
Crab-eating macaque Macaca fascicularis RPS27P7
Rhesus Macaca mulatta RPS27P7
Baboon Papio anubis RPS27P11
Golden snub-nosed monkey Rhinopithecus roxellana RPS27P3
Marmoset Callithrix jacchus RPS27P36
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS27P8
ACGAGAACAGGCCTCTCACAAAGAATCTCCCTCCCTCTCCAGAAAAAAAGAGCAAGCACAAGAAGTGCCTGGTGCAGAGCCCCAATTCTTACTTCCTGAACGTGAAATGCCCAGGATGCTATAAAATCACCATGGTCGTCAGTCATGCACAATAGTAGTTGTGTGTCTGGCTGCTCTGCTGTCCTCTGCCAGCCTACAGGA
>XM_008970323.2
CCGCTTTCCCTCCTTTCCGGCGGTGACGACCTACGCACCCGAGAACATGCCTCTCGCAAAGGATCTCCTTCATCCCTCTCCAGAAGAGGAGAAGAGGAAACACAAGAAGAAACGCCTGGTGCAGAGCCCCAATTCCTACTTCATGGATGTGAAATGCCCAGGATGCTATAAAATCACCACGGTCTTTAGCCATGCACAAACGGTAGTTTTGTGTGTTGGCTGCTCCACTGTCCTCTGCCAGCCTACAGGAGGAAAAGCAAGGCTTACAGAAGGATGTTCCTTCAGGAGGAAGCAGCACTAAAAGCACTCTGAGTCAAGATGAGGGGAAACCATCTCAATAAACACATTTTGGATAAA

Publications

PMID - Link Title