Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name ARF4P1
Plot displaying the genomic locations of a retrocopy (in chr13) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chr13:60591072-60591661  UCSC
Strand +
Parental Sequence XM_019023705.2
Parental seq. overlap 508 bp
Parental seq. overlap (%) 22.3%
Genomic Region Intergenic
Retrocopy Summary ARF4P1, located on chr13:60591072-60591661, is a retrocopy of the parental gene ARF4. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ARF4
Full Name N/A
Also known as ARF4
Coordinate chr3:57474661-57501042
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ARF4P4
Chimpanzee Pan troglodytes ARF4P3
Bonobo Pan paniscus ARF4P2
Orangutan Pongo abelii ARF4P2
Gibbon Nomascus leucogenys ARF4P1
Green monkey Chlorocebus sabaeus ARF4P2
Crab-eating macaque Macaca fascicularis ARF4P3
Rhesus Macaca mulatta ARF4P3
Baboon Papio anubis ARF4P2
Golden snub-nosed monkey Rhinopithecus roxellana ARF4P2
Marmoset Callithrix jacchus ARF4P3
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ARF4P1
AGCAAGAAGCAGATGTTAATTTTGATGATTGGATTGGATGCTGCTGTCAAGGTGATCTCTGTATAAGGTAAAGTTAGGGGAGATGGTCACTATCATTCCTACCAATGGTTTTAACGTGAAAAGAGTAGAATACAAGAGCATTTGTTTCACAGTATGAGAAGGTCAAGATAAAATTAGGCCTCCCTGGAGGCATTACTTCCAGAATACCCAGGCTCTTATTTTTGGCAGATAGCAATGATTATGAAAGAATTCAGGAGGGAGCAGAAGAGCTACAGAAAATGCTTCACAGAGATGGGCTGGGAGATACTGTGCTGTTGCTTTTTGCAAACAAACAAAATTTGCCAAATGCTATGGCCATCGGTGAAATGACAGACAAATTCAGTCTCTGTGCAACAGAACATGGTATATTCAAGCCACTTGTGCTATACAAGGCACTGTTCTGTATGAGGGACTTAACTGGCTGGCAGGTGAGCTTTCAAAACATTCAATGAAACTGGTTATCTAACCAAGGACATGTTTGATAGAATTGAAACTAGGCTTGTTACAACAAAACTAGTTTGCATCTTGGTTATTATACAATCTCTGGGACT
>XM_019023705.2
GAACACGTGTTGGAGCGCTCTCGCCTTGACAGAATTAGAGATCTTCAGAATCACTTGGCGTGGTGGTCAAAGCGTCTAGCCCTAGCTCATTAGGGTGCCACAGTTTCTCGGCCCACAAGTCAGCTTTTAACCACTTTTCTCCGCAAAAGGCCGGACCGGTCTTCATGCGTTAACTAAAGCAAGCGTCTGGTCCCGTGTGTGAAACGTGTAAGTTCATGGCATCAGGGAATACCCATCGCGCGTACCGTAATAGAAGAGGGCGAGGTTCCTCACCTAACCCATAATGCTCAGCTCGCCTTTCCGGAAGCAAGGACTATCACCCCGACAATGCCTTCATCCGGGCGGAAGCGTCTCACCCTGAGTCTGATTTGGCAGTGACGAAGCGAGGTATTGTGGGACTTTGTCCGTCTCCCAGTACGCATGTGCCTCAGCCGGCCTCTCCCGGCTCCTGGGGCCACGTCCGGGCGGTGGCGTCGTCGAGAGATGCACGTCAGCGAAACTGGCCAATCCCCTGCATGCGCAAGCGCAGTGGCTCGGGCGCACCGGAAGCGCAGGGGGATGGGGCGGCGGTGACGCGATTCTGTCCGCGTTGGAGGGGCCGGGCCGCTGCTGGAGTCGCCGCGGCCGCCGCGTGACGTGGCACAGCCAGAGCCTAAAGGCTAGAGCCGGAGCTGCCGCGCCAGTCGCCTAGCAGGTCCTCTACCGGCTTATTCCTGTGCCGGATCTTCATCGGCACAGGGGCCACCGAGACGTTTCTGCCTCCCTCTTTCTTCCTCCGCTCTTTCTCTTCCCTCTCGTTTAGTTTGCCTGGGAGCTTGAAAGGAGAAAGCACGGGGTCGCCCCAAACCCCTTCTGCTTCTGCCCATCACAAGTGCCACTACCGACATGGGCCTCACTATCTCCTCCCTCTTCTCCCGACTATTTGGCAAGAAGCAGATGCGCATTTTGATGGTTGGATTGGATGCTGCTGGCAAGACAACCATTCTGTATAAACTGAAGTTAGGGGAGATAGTCACCACCATTCCTACCATTGGTTTTAATGTGGAAACAGTAGAATATAAGAACATTTGTTTCACAGTATGGGATGTTGGTGGTCAAGATAGAATTAGGCCTCTCTGGAAGCATTACTTCCAGAATACCCAGGGTCTTATTTTTGTGGTAGATAGCAATGATCGTGAAAGAATTCAGGAAGTAGCAGATGAGCTGCAGAAAATGCTTCTGGTAGATGAGTTGAGAGATGCAGTACTGCTTTTTGCAAACAAACAGGATTTGCCAAATGCTATGGCCATCAGTGAAATGACAGATAAACTAGGGCTTCAGTCTCTTCGTAACAGAACATGGTATGTTCAAGCCACTTGTGCAACACAAGGAACTGGTCTGTATGAGGGACTTGACTGACTGTCAAATGAACTTTCAAAACGTTAAATGAAACCGGATGTCTAACCAAGGACTTGTTTGATAAAATTGGTCTAGGCTTCTTACAACAAAATTAGTTTGTATCTTGGTTATTAAACAGTATCTGGGACTGGTTTGGGCAGAATATTAAACTTATTTTGTTGCCAATTATTGTTTACCGAGTATAATGTTGCTATTTAGCAATGTGCTTGGTTTTAAAGAAATTCTCCTGGGAAAAAAGTATCCTCTTTTAATTTTACTTCCCATAAGCGTAAATGCCTGGACATAGCTCTTGTGAAACCTTTAAATAAATTGTTTTGAGTGTTTTTTGAGCCCCAGACAAATAATGTTTTAAAGTTATCCCCTTGCTACTTTACTGATACCTTTATCATTCCTAAGACAGTTTGCTAATTTAAAAATGTAGCATTCCATTTGTATTTATTTCTCTCCCTTGCCAAAAAGATTTTCTAATAGTGCTTGTACCAGCCAGAGAAAGATCCAAAACACTACTCAGCTCTCTTGCACTGAGGAAATTTTTCCCCCTACATTGACTCCTGGCCTACATCAGCCAAACTTAACCTTGGTGGGGTTTGGATTTGATAGCCAATTAGTTCTGTGCTGGTTGCAAAGAATTGATATTTAGATGGTTTTTAATACTCAGCAGATTGTCTTCCTTTATATTGTGTCTTTTTTATGTTGCATGTTGCTTTTGTTATCAGCCTGATTTTTTGCTCAGTATATGATAGTTCTGCTGATGTTTTGTTTATTGGGCAGACATATCTTCATTAAGAGTTTTTGGAAAACTCATCAAATTCGATGAATACATTTTCTTCATAACCCATTTGGAATTATTCCTAATAAAATGATAAAATACGTAA

Publications

PMID - Link Title