Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ATP5PDP4
Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chrUn_NW_022154661v1). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chr15:18326191-18326772  UCSC
Strand -
Parental Sequence XM_004040956.2
Parental seq. overlap 540 bp
Parental seq. overlap (%) 77.6%
Genomic Region Intergenic
Retrocopy Summary ATP5PDP4, located on chr15:18326191-18326772, is a retrocopy of the parental gene ATP5PD. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ATP5PD
Full Name N/A
Also known as ATP5PD
Coordinate chrUn_NW_022154661v1:38203-46066
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ATP5PDP1
Chimpanzee Pan troglodytes ATP5PDP4
Bonobo Pan paniscus ATP5PDP4
Orangutan Pongo abelii ATP5PDP4
Gibbon Nomascus leucogenys ATP5PDP3
Green monkey Chlorocebus sabaeus ATP5HP8
Crab-eating macaque Macaca fascicularis ATP5HP3
Rhesus Macaca mulatta ATP5PDP3
Baboon Papio anubis ATP5PDP4
Golden snub-nosed monkey Rhinopithecus roxellana ATP5PDP1
Marmoset Callithrix jacchus ATP5PDP12
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ATP5PDP4
GGACCATGGGCTGCCAGGGTCGGTGAAGTATACCAAGATGGCTGGGTGAAAACTTGCTCTAAAAACCATTGACTGGGTAGCTTTTGCAGAGATGATACCCCAAAACCAAAAGGCCATTGCTAATTACCTGAAATCCTGGAATGAGACCCTTAACTCCAGGCTGGCTACTTTACCTGAGAATCCACCAGCTATTGACTGGGCTTACTACAAGGCCAATGTGGCCAAGGCAGGCTTGGTGGATGACTTTGAGAAGAAGTTTAATGCCCTGAAGCTTCCTGTACCAGAGGATAAATATACTGCCCAGGTGGATGCTGAAGAAAAAGAAGATGGGAAAACTTGTGCTGAGTGGGTGTCTCTCTCAAAGGCCAGGTTGGAGAATATGAGAAACAGCTGGAGAAGATGAGGAACTTAATTCCATTTGATCAGATGACCACTGACGACTTGAACGAAGCTTTCCCGGAAACCAAATTAGACAAGAAAAAGTATCACTATTGGTCTCACCAACCAATCAAGAATTTATAAAATTAAGTCCAGGAAGAAGCCCTGGCCCTTATAGTACACATTCTGGACATTAAAAATAAA
>XM_004040956.2
CATCTCTATTGGCTGATCTGCGAAGCAAGGCCCACCCCCTTGGCTTTGGGGTTGGCTGAGGAAAGATCTTCCCGTGACCCACTTCCGTTACTTGCTGCGGAGGACCGTGGGCAGCCAGGGTCGGTGAAGGATCCCAAGATGGCTGGGCGAAAACTTGCTCTAAAAACCATTGACTGGGTAGCTTTTGCAGAGATCATACCCCAGAACCAAAAGGCCATTGCTAGTTCCCTGAAATCCTGGAATGAGACCCTCACCTCCAGGTTGGCTGCTTTACCTGAGAATCCACCAGCTATCGACTGGGCTTACTACAAGGCCAATGTGGCCAAGGCTGGCTTGGTGGATGACTTTGAGAAGAAGTTTAATGCGCTGAAGGTTCCCGTGCCAGAGGATAAATATACTGCCCAGGTGGATGCCGAAGAAAAAGAAGATGTGAAATCTTGTGCTGAGTGGGTGTCTCTCTCAAAGGCCAGGATTGTAGAATATGAGAAAGAGATGGAGAAGATGAAGAACTTAATTCCATTTGATCAGATGACCATTGAGGACTTGAATGAAGCTTTCCCAGAAACCAAATTAGACAAGAAAAAGTATCCCTATTGGCCTCACCAACCAATTGAGAATTTATAAAATTGAGTCCAGGAGGAAGCTCTGGTCCTTGTATTACACTTTCTGGACATTAAAAATAATAATTATACAGTT

Publications

PMID - Link Title