Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ATXN2LP1
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chr7:17223145-17226830  UCSC
Strand -
Parental Sequence XM_031003084.1
Parental seq. overlap 3382 bp
Parental seq. overlap (%) 76.3%
Genomic Region Intergenic
Retrocopy Summary ATXN2LP1, located on chr7:17223145-17226830, is a retrocopy of the parental gene ATXN2L. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ATXN2L
Full Name N/A
Also known as ATXN2L
Coordinate chr16:15477907-15492152
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ATXN2LP1
Chimpanzee Pan troglodytes ATXN2LP1
Bonobo Pan paniscus ATXN2LP1
Orangutan Pongo abelii ATXN2LP1
Gibbon Nomascus leucogenys ATXN2LP1
Green monkey Chlorocebus sabaeus ATXN2LP1
Crab-eating macaque Macaca fascicularis ATXN2LP1
Rhesus Macaca mulatta ATXN2LP1
Baboon Papio anubis ATXN2LP1
Golden snub-nosed monkey Rhinopithecus roxellana ATXN2LP1
Marmoset Callithrix jacchus ATXN2LP2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ATXN2LP1
TCTCTCCACCCCGCCGACACCTCGGGGCTCCCCCCGCCTGCCAATGGCAGGCCTGGCTTCCCGATCCCCCTCGCTTCCCATGCTCTCCCGCGAGGCCCCGGCCCCGGCCCCCTCTCTCCCTCCCTTCCTTTTAATTCCTCTTCCGGACGCTGCTACCATGTTGAAGCCTCAGCCGCCACAACAGCTGTCCAAGCCCCAGTAGCCGCCCCCTACGCAACAGGCCATGCTTCCTGCGCAGCTCCACCGGGGCCTCCTGCAGCCTCCTCCGCCTGCCTGGGGCCTTCGGCTGCGGGGAGCGGGCTCCGCTGGGGAGCCGAAAGCATCTTGACAACGCAGCCGCCACCGCAGCAGCAGCACCAGGAGAGGCCGGGGGCCGCTGCCATCGGCAGCGCCAGGGGACAGAGCACAGGAAAGGGACCTCCGCAGTCACCTGTGTTCGAAGGCGTCTACAACAATTCCAGAATGCGGCACTTCCTTACAGCTGTTGTGGGCTCCGCTTGTGATGTAAAGGTGAAAAATGGCAGCACCTATGAGGGTATCTTCAAGACGCTGAGCTCAAATTTTGAACTAGCAGAGGATATTGTACACCAGAAAGCATCTGAGCCAGCAGGTGGCCCTCGTCGGGAGGACACTGTAGACACCATGGTGTTTAAGCCAAGTGATGTCATGCTTGTTCACTTCCGAAATGCTGACTTCAGCTGCGCTACTAAAGACAAGTTCACCGATTCAGCCATCGCCATGAACTCGAAGGGAATGGGGAACACAAAGAGAAGGTGCTTCAGCGCTGGGAGCGGGTTGACAGCAACAGCGACAACTACGACCTCGAGTCCAACATGTCCAATGGATGGGACCCCAACGAAATGTTCAAGTTCAATGAGGAGAACTACGGTGTGAAGACCACCTATGACAGCAGTCTTTCTGCTTATACGGTGCCCTTAGAAAAGGACAACTCGAAAGTTTCAGCTGAGAGCTGCGTGCGGCCCAGTTGGCTCCAGAGATTGAATCAAGCCCCCAGTACCGCCTGCGGATCGCCATGCAGAGCGACGATGGGCGCACTGAAGAGGAGAAGCACACGGCGGTCCAGCGGCAGGGGTCGGGGCGGGAGAGCCCCAGCTTGGCATCCAGGAAGGGGAAGTGTATCATCCCTCTGCCTCAACGAGTCCAGGAAGGTCCCCGGGGAGGAGTTTGACGCAGCAGCCCTCTGGGCAGTCAGCCTGGCCTTAGCAATTTGTCACCTCGTGGCCCTCACCATCTGGACAATAGCAATCCTGGCCCAGGTTCTGAGGCCCGTGGTATCAATGAAGGCCCTTCCCACATGTCCCCAAAGGCACAGAGGCCTCTGAGAGGTGCCAAGACTCTGTCTTCGCCCAATAATAGGCCTTCCGGAGAAACTTCTGTTCCTCCTCCTGCAGTGGGCCGGATGTATCCCCCGAGTTCTCCCAAGTCTGCTGCCCCTGCCCCAATCTCACCTTCCTGTCCTAAGCTTCCCATTGGCTTGGCAGTGCCAACCTCTTCAGCCTCCATCCCTGTGACCTCATCAGTCTCAGATCCTGGAATGGGCTACATTTCCTCAGCTTCTCCAAAGATCTCCCTGGCCCCCACAGATGTAAAAGAACTCTCTACCAAGGAACCTGGGAGAACCCTGGAGCCCCAGTAGCTGGCTCAGATAGCTGAGAAAGTCCCTGGTCTTCAGAATGAACAGAAACTATTCCAACTGGAAGAACTGAGAAAGTGTGGGGCCCAGTTTAAGCTTCAGCCCGGTAGTTCCCCTGAGAACAGCCTGGATCCTTTTCCTCCCTGGACCTTAAAGGAGGAGGCCAAAGGAAAGGAGAAGGAGGATGTTGGTCTGTTGACTTCAAAACCCATGGGGTCCCCCGTCTCCTCCAAGACAGAGTCTGTATCGGATAAGGAGGACAAACCACCCCTGGCACCAGCAGGAGGCACTGAGGGGCCAGAGCCGCCCCCACCACCTTGCCCAAGCCAAACTGGCAGCCTCCCCTTTGGCCTCATCAAAGGAGAGGACAAGGATGAGGGCCCTATTGCTGAACAAGAAATCAACGTTGAACCCCAGTACCAACGAGTGCAATCCCACAAAGCCTCTGCTGTCTGTGAATAAATCCACCAGTATCCCAACTTCTCCAGGGCCTCAGACTGATTCAACTCCCTTTATCCCAGTGCTGACGGCAGGCCGGAGTGGGCTATACAGCCCCCAGTACATCTCCTGCACACCTCAGATCCAAATGGGACCAGCTGTGCAGGCACCTCAGATGTATCCGTATCCTGTATCCAATTCAGTGTCTGGGCAGCAGGGCAAGTACTGGGGAGCAAAAGGCTCCCTGCTTCCACAGCTCTGGGACCAACACCAGCCAGCCTCAGCCCCGCCACGGTGGCTGCTGGCTCACCTCTGGTGGCTGCCACGCCCTATTCTTCCTACATTCCCTACAACCCTCAGCAGCTCCCAGGCCCACCTGCCATGATGCAGCCCATGGCCCACTATCCCTCACAGCTGGTGTTTGCTCCCATGCTTCAAAGCAATCCACGCATGCTGATGTTGGGCAGCCATTCCCAGGTCATCGTGTCATCCTCCACCCCTCAGTACCCTTCTGTGGAGCAGCCCACCCCCCAAGCCCTTTATGTCACTGCTCACCAGGCTTACCCACACTATGCCACACAGCTTCATGCCCACCAGCCGCAGCCAGCTATCATGCCTACTGGGAACCAGCCTGCAGCCCCCAGTCCTGTCCAGCATCAGGCGGGGGTGGCCCCACACCTGGACAGTGGACAGCCACAGCAGAATCTGTACCACCCAGGGGCCCTGACAGGCATGCTGCCCTCTCTGCCACTGGGACCTTCTGCCCAGTCCCCTCAGAGCGGTTTCCCCCAGCCAGCCACTGTGTATGCCATCCACCACAAGCAGCTGCCCCACGGCTTCACCAACATGGCCCATGTTCCCCAGGCCCGTGTCCAAACTGGAATCACAGCAGCCCCGCCCCCTCACCCTGGGGCTCCCCACTCGCCCCAGGTGATGCTGCTGCACCCACCCCAGAATCATGGGCCCCCCCCGCAAAGTGCAGTGCCCCAGAGTGGGGTGCCTGCATTCTCAGCTTCCACACCCTTACCCTACCCCTACACTGGACACCCCCAAGCTCTCAGTGACCCCGACTGTCTCCTGACTTACTGGTGGAGTTCAATCTTATCCCTCCCAGCAGCTCCCCTTCCACCCCGCCGGGGAACTGAAGATTTTCCTGGCCGCGATCTGAGACCTCCATGAGTGGAGAGAAGAATGATCTACGTCTCTTCCCCCAGCAGCTCAGACTACTCCCAGCTCCCCATCCCCCCTTTCCCCAGGGGAGCTGGGGAATTCCTACCAAGCACCTTGAATAGGAGGGGCCTACAGAGGACAGCGCCAGGGTCCATCGGGGTTGAGGGGTTACTGCTCTGTCCCTGCCTGTCCCCACCCAGTATTGCCCTCCCATCCTCTCATCTATTTCCCTGCTGGACACAGAAGATCTTTTATTTTGTGTTATTTATAACCTGAGACTTAGGCCCCCTGTTCTTTATTTCCCATTAACTTGAGTGACCTGTGTGAGAGACAGACAGATGACCCATGAGGATGGCTGGACAAGAACTTTTACTTTTTATTACATAAAAATATTAAAAATAAATAAATa
>XM_031003084.1
GAGACCCCCTCCCCTTCCGCCTCGCGGCGCTTCCTCGCGCCGCGGTCTTCTCTCTCCACCCCCGACACCGCGGGGCTCCCCCCGCCCGCCCACAGCGGGCCCCGGCTGCCCGATCCCCCTCGCTTCCCGCGCTCTCCAGCGGGGCCCCAGCCCCAGCCCCCTCTCTCCCTCCCTTCTCTCTAATTCCCCTTCCGGACGCTGCCATCATGTTGAAGCCTCAGCCGCCACAACAGCCCTCCCAGCCCCAGCAGCCGCCCCCCACGCAACAGGCCGTGGCTCGTCGGCCCCCCGGGGGCACCAGCCCTCCCAACGGCGGCCTCCCGGGGCCGCTGGCCACCTCTGCGGCTCCTCCCGGGCCTCCAGCGGCCGCCTCCCCCTGCCTGGGGCCTGTGGCCGCTGCCGGGAGCGGGCTCCGCCGGGGAGCCGAAGGCATCTTGGcgccgcagccgccgccgccgcagcagcACCAGGAGAGGCCGGGGGCAGCCGCCATCGGCAGCGCCAGGGGACAGAGCACAGGAAAGGGACCCCCACAGTCACCTGTGTTTGAAGGCGTCTACAACAATTCCAGAATGCTGCATTTCCTTACAGCTGTTGTGGGCTCCACTTGTGATGTAAAGGTGAAAAATGGTACCACTTATGAGGGTATCTTCAAGACGCTAAGCTCAAAGTTTGAACTAGCCGTGGATGCTGTGCACCGGAAAGCATCTGAGCCAGCAGGTGGCCCTCGTCGGGAGGACATTGTGGACACCATGGTGTTTAAGCCAAGTGATGTCATGCTTGTTCACTTCCGAAATGTTGACTTCAACTATGCTACTAAAGACAAGTTCACCGATTCAGCCATTGCCATGAACTCGAAAGTGAATGGGGAACACAAAGAGAAGGTGCTTCAGCGCTGGGAGGGGGGTGACAGCAACAGCGACGACTATGACCTCGAGTCTGACATGTCCAATGGATGGGACCCCAATGAAATGTTCAAGTTCAATGAGGAGAACTACGGTGTGAAGACTACCTATGATAGCAGTCTTTCTTCTTATACAGTGCCCTTAGAAAAGGACAACTCAGAAGAGTTTCGTCAGCGAGAGCTGCGTGCGGCCCAGTTGGCTCGAGAGATTGAATCAAGCCCCCAGTACCGCCTACGGATCGCCATGGAGAACGACGATGGGCGCACTGAAGAGGAGAAGCACAGTGCAGTCCAGCGGCAGGGCTCAGGGCGGGAGAGCCCCAGCTTGGCATCCAGGGAGGGGAAGTATATCCCTCTGCCTCAACGAGTCCGGGAAGGTCCCCGGGGAGGAGTTCGATGCAGCAGCTCTCGGGGCGGTCGGCCTGGCCTTAGCTCTTTGCCACCTCGTGGCCCTCACCATCTGGACAACAGCAGCCCTGGCCCAGGTTCTGAGGCCCGTGGTATCAATGGAGGCCCTTCCCGCATGTCCCCAAAGGCACAGCGGCCTCTGAGAGGTGCCAAGACTCTGTCTTCGCCCAGTAATAGGCCTTCTGGAGAAACTTCTGTTCCACCTCCTCCTGCAGCTCCCCCTTTTCTTCCAGTGGGCCGGATGTATCCCCCGCGTTCTCCCAAGTCTGCTGCCCCTGCCCCAATCTCAGCTTCCTGTCCAGAGCCTCCCATCGGCTCGGCAGTGCCAACCTCTTCAGCCTCCATCCCTGTGACCTCATCAGTCTCAGATCCTGGAGTGGGCTCCATTTCTCCAGCTTCTCCAAAGATCTCCCTGGCCCCCACAGATGTAAAAGAACTCTCTACCAAGGAATCTGGGAGAACTCTGGAGCCCCAGGAGCTGGCTCGGATAGCTGGGAAAGTCCCTGGTCTTCAGAATGAACAGAAACGATTCCAACTGGAAGAACTGAGAAAGTTTGGGGCCCAGTTTAAGCTTCAGCCCAGTAGCTCCCCTGAGAACAGCCTGGATCCTTTTCCTCCCCGGATCTTAAAGGAGGAGCCCAAAGGAAAGGAGAAGGAGGTTGATGGTCTGTTGACTTCAGAGCCCATGGGGTCTCCCGTCTCCTCCAAGACAGAGTCCGTATCGGATAAGGAGGACAAACCACCCCTGGCACCATCAGGAGGCACTGAGGGGCCAGAGCAGCCCCCACCACCTTGTCCAAGCCAAACTGGCAGCCCCCCGGTGGGCCTCATCAAGGGAGAAGACAAAGATGAGGGCCCTGTTGCTGAACAAGTAAAGAAATCAACGTTGAACCCTAATGCTAAGGAGTTCAATCCTACAAAGCCTCTGCTGTCTGTGAATAAATCCACCAGTACCCCAACTTCTCCGGGGCCCCGGACTCATTCAACTCCCTCCATCCCGGTGCTGACAGCAGGCCAGAGTGGGCTATACAGCCCCCAGTACATCTCCTACATACCTCAGATCCACATGGGACCAGCTGTGCAGGCACCTCAGATGTATCCATATCCTGTATCCAATTCAGTGCCAGGGCAGCAGGGCAAGTACCGGGGAGCAAAAGGCTCCCTTCCTCCGCAGCGCTCGGACCAGCACCAGCCAGCCTCAGCCCCGCCGATGATGCAGGCCGCCGCGGCTGCTGGCCCGCCTCTGGTGGCTGCCACGCCCTATTCTTCCTACATCCCCTACAACCCTCAGCAGTTCCCAGGCCAGCCGGCCATGATGCAGCCCATGGCCCACTACCCCTCACAGCCGGTGTTTGCCCCCATGCTTCAGAGCAACCCACGCATGCTGACATCGGGCAGCCATCCCCAGGCCATCGTGTCATCCTCTACCCCTCAGTACCCTTCTGCAGAGCAGCCTACCCCCCAAGCCCTTTATGCCACTGTTCACCAGTCCTACCCACACCATGCCACACAGCTCCATGCCCACCAGCCGCAGCCGGCTACCACGCCTACTGGAAGCCAGCCGCAGTCCCAGCATGCGGCCCCCAGTCCTGTCCAGCATCAGGCGGGGCAGGCCCCACACTTGGGCAGTGGACAGCCACAGCAGAATCTGTACCACCCAGGGGCCCTGACAGGCACGCCACCCTCTCTGCCACCGGGACCTTCTGCCCAGTCCCCTCAGAGCAGCTTCCCCCAGCCAGCCGCTGTGTATGCCATCCACCACCAGCAGCTGCCCCACGGCTTCACCAACATGGCCCATGTTACCCAGGCCCATGTCCAAACTGGAATCACAGCAGCCCCGCCCCCTCACCCTGGGGCTCCCCACCCGCCCCAGGTGATGCTGCTGCACCCACCCCAGAGTCATGGGGGGCCCCCCCAAGGCGCGGTGCCCCAGAGTGGGGTGCCTGCACTCTCAGCTTCCACACCCTCACCCTACCCCTACATCGGACACCCCCAAGGTGAGCAGCCTGGCCAGGCGCCTGGATTTCCAGGAGGAGCCGATGACAGGATTCGTGAGTTCTCATTAGCTGGGGGAATTTGGCATGGAAGAGCTGAGGGGCTGCAGGTGGGGCAGGATGCACGGGTTCTGGGTGGGGAGTGAGGGGTCTTGGAGGCAGGGCTGTCCCACAGGGCGCCCGCCGACCTGCACCTGTCTGTGAAGTATGTAGGGTGGGCAGAAGCCACAGTCGCCGCCGCCAGGGGCTTGCTCCTGGCTCTGTCCTTTGCTTCCCTCCGTCCTCGCTCAGTTGTGATCCAGCAGCCCCCCTCCCCACTGCCTCCCCAGCTCTCAGTGACCCCGACTGTCTCCTGACTTAGCCGAGGTAAGGTCAGTGCAGCAGACAGGGCCAGACTGGGGTGTGGGGGGCTGAGCTGGGCACATGAGTGAGGGCTCTGGCTTACTGGGAAACAGCGATTGACCTGTGCTTCTGACAGCCCCCGAGACACCTTGAGGAGGCCGCTCCTTCCCAGACACACCCCCACGCCCCCACTGGACGGCATTGGAGGAAGGGACAGCTGCTTGGGTTCTAATGCTCCTGCTCTCTTCTCTTTCCCCTCCAACCAGTTCAATCTCATCCCTCCCAGCAGCTCCCCTTCCACCCCCCGGGGAACTGAAGATTGTCCTGGCCGCGACCTGAGACCTCCATGAGTGGAGGGAAGAGTGATCTATGTCTCTTCCCCCAGCAGCTCGGACCACTCCCAGCCCCCCATCCCCCCATTCCCCAGGGGAGCTGGGGAATTCCTGCCAAGCACCTTGAATGGGAGGGGCCTCACAGAGGGCAGGGCCAGGGTCCAGCAGGGGTGGGGGGTTCCTGCTCTGCCCCTGCCCGTCCCCACCCAGTCTTGCCCTCCCATCCTCTCATCTATTCCCCCGCTGGAGACGGAAGATCTTTTATTTTCTATTATTTATAACTTCAGACTTGGGCCCCCTGTTCTTTCTTTCCCATTAACTTGAGTGACCTGTGTGAGAGACAGACAGATGCCCCACGAGGATGGCTGGACAAGGACTTTTACTTTTTATTACATaaaaatattaaaaaataaataaaaaaaataaaaTTTTAAACTAACTTAA

Publications

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