Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ATXN2LP1
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr7:16583247-16586904  UCSC
Coordinates (T2T) chr7:16712966-16716623  UCSC
Coordinates (hg19) chr7:16622872-16626529  UCSC
Strand -
Parental Sequence NM_001387200.1
Parental seq. overlap 3292 bp
Parental seq. overlap (%) 84.1%
Genomic Region Intergenic
Retrocopy Summary ATXN2LP1, located on chr7:16583247-16586904, is a retrocopy of the parental gene ATXN2L. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ATXN2L
Full Name ataxin 2 like
Also known as A2D|A2LG|A2LP|A2RP
Coordinate chr16:28822999-28837237
Strand +
Gene summary This gene encodes an ataxin type 2 related protein of unknown function. This protein is a member of the spinocerebellar ataxia (SCAs) family, which is associated with a complex group of neurodegenerative disorders. Several alternatively spliced transcripts encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes ATXN2LP1
Bonobo Pan paniscus ATXN2LP1
Gorilla Gorilla gorilla ATXN2LP1
Orangutan Pongo abelii ATXN2LP1
Gibbon Nomascus leucogenys ATXN2LP1
Green monkey Chlorocebus sabaeus ATXN2LP1
Crab-eating macaque Macaca fascicularis ATXN2LP1
Rhesus Macaca mulatta ATXN2LP1
Baboon Papio anubis ATXN2LP1
Golden snub-nosed monkey Rhinopithecus roxellana ATXN2LP1
Marmoset Callithrix jacchus ATXN2LP2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ATXN2LP1
CCCCCGACACCTCGGGGCTCCCCCCGCCTGCCAATGGCAGGCCTGGCTTCCCGATCCCCCTCACTTCCCATGCTCTCCCGCGGGGCCCCAGCCCCGGCCCTTTCTCTCCCTCCCTTCCTTTTAATTCCTCTTCCGGACGCTGCTATCATGTTGAAGCCTCAGCCGCCACAACAGCTGTCCAAGCCCCAGTAGCCGCCCCCTACGCAACAGGCCATGCCTCCTACGCAGCTCCACCGCGACCTCCCGCAGCCTCCTCCGCCTGCCTGGGGCCTTCGGCTGCGGGGAGCGGGCTCCGCTGGGGAGCCGAAAGCATCTTGACCACGCAGCCGCCACCGCAGCAGCAGCACCACGAGAGGCCGGGGGCCGCTGCCATCGGCAGCGCCAGGGGACAGAGCACAGGAAAGGGACCTCCGCAGTCACCTGTGTTTGAAGGCGTCTACAACAATTCCAGAATGCTGCACTTCCTTACAGCTGTTGTGGGCTCCACTTGTGATGTAAAGGTGAAAAATGGCACCACCTATGAAGGTATCTTCAAGACGCTGAGCTCACATTTTGAACTAGCAGAGGATATTGTACACCAGAAAGCATCTGAGCCAGCAGCTGGCCCTCGTCGGGAGGACACTGTAGACACCATGGTGTTTAAGCCAAGTGATGTCATGCTTGTTCACTTCCGAAATGCTGACTTCAACTACGCTACTAAAGACAAGTTCACCGATTCAGCCATCGCCATGAACTCGAAGGGAATGGGGAACACAAAGAGAAGGTGCTTCAGCGCTGGGAGCGGGGTGACAGCAACAGCGACAACTACGACCTCGAGTCCAACATGTCCAATGGATGGGACCCCAATGAAATGTTCAAGTTCAATGAAGAGAACTACGGTGTGAAGACCACCTATGACAGCAGTCTTTCTCCTTATACGGTGCCCTTAGAAAAGGACAACTCGAAAGAGTTTCAGCTGTGAGAGCTGCGTGCAGCCCAGTTGGCTCCAGAGATTGAATCAAGCCCCCAGTACCACCTGCGGATCGCCATGGAGAGCGACGATGGGCGCACTGAAGAGGAGAAGCACAGGGCGGTCCAGCGGCAGGGCTCGGGGCGGGAGAGCCCCAGCTTGGCATCCAGGAAGGGGAAGTATATCATCCCTCTGCCTCAACGAGTCCAGGAAGGTCCCCGGGGAGGAGTTTGACGCAGCAGCCCTCTGGGCAGTCAGCCTGGCCTTAGCAATTTGTCACCTCGTGGCCCTCGCCATCTGGACAATAGCAATCCTGGCCCAGGTTCTGAGGCCCGTGGTATCAATGGAGGCCCTTCCCACATGTCCCCAAAGGCACAGAGGCCTCTGAGAGGTGCCAAGACTCTGTCTTCGCCCACTAATAGGCCTTCCGGAGAAACTTCTGTTCCTCCTCCTGCAGTGGGCCGGATGTATCCCCCGAGTTCTCCCAGGTCTGCTGCCCCTGCCCCAATCTCACCTTCCTGTCCTGAGCTTCCCATCGGCTTAGCAGTGCCAACCTCTTCAGCCTCCATCCCTGTGACCTCATCAGTCTCAGATCCTGGAATGGGCTACATTTCCTCAGCTTCTCCAAAGATCTCCCTGGCCCCCACAGATGTAAAAGAACTCTCTACCACGGAACCTGGGAGAACCCTGGATCCCCAGTAGCTGGCTCAGATAGCTGAGAAAGTCCCTGGTCTTCAGAATGAACAGAAACTATTCCATCTGGAAGAACTGAGAAAGTGTGGGGCCCAGTTTAATCTTCAGCCCAGTAGTTCCCCTGAGAACAGCCTGGATCCTTTTCCTCCCTGGACCTTAAAGGAGGAGGCCAAAGGAAAGGAGAAGGAGGATGATGGTCTGTTGACTTCAGAGCCCATGGGGTCCCCCGTCTCCTCCAAGACAGAGTCTGTATCGGATAAGGAGGACAAACCACCCCTGGCACCAGCAGGAGGCACTGAGGGGCCAGAGCCGCCCCCACCACCTTGCCCAAGCCAAACCGGCAGCCTCCCCTTTGGCCTCATCAAAGGAGAGGACAAGGATGAGGGCCCTATTGCTGAACAAGAAATCAACGTTGAACCCCAATACCAAGGAGTTCAATCCCACAAAGCCTCTGCTGTCTGTGAATAAATCCACCAGTATCCCAACTTCTCCAGGGCCTCAGACTCATTCAACTCCCTCTATCCCAGTGCTGACGGCAGGCCAGAGTGGGCTATACAGCACCCAGTACATCTCCTACACACCTCAGATCCAGATGGGACCAGCTGTGCAGGCACCTCAGATGTATCCATACCCTGTATCCAATTCAGTGTCTGGGCAGCAGGGCAAGTACTGGGGAGCAAAAGGCTCCCTGCTACCACAGCTCTGGGACCAACACCAGCCAGCCTCAGCCCCGCCACGGTGGCTGCTGGCTCACCTCTGGTGGCTGCCACGCCCTATTCTTCCTACATCCCCTACAACCCTCAGCAGCTCCCAGGCCCACCTGCCATGATGCAGCCCATGGCCCACTATCCCTCATAGCCGGTGTTTGCTCCCATGCTTCAAAGCAACCCACGCATGCTGATGTTGGGCAGCCATCCCCAGGTCATCGTGTCATCCTCCACCCCTCAGTACCCTTCTGTGGAGCAGCCCACCCCCCAAGCCCTTTATGTCACTGCTCACCAGGCTTACCCAAACTATGCCACACAGCTTCATGCCCACCAGCTGCAGCCGGCTATCACACCTACTGGGAACCAGCCTGCAGCCCCCAGTCCTGTCCAGCATCAGGCGGGGGTGGCTCCACACCTGGGCAGTGGACAGCCACAGCAGAATCTGTACCACCCAGGGGCCCTGACAGGCATGCTGCCCTCTCTGCCACCGGGACCTTCTGCCCAGTCCCCTCAGAGCGGTTTCCCCCAGCCAGCCACTGTGTATGCCATCCACCACAAGCAGCTGCCCCACGGCTTCACCAACATGGCCCATGTTCCCCAGGCCCATGTCCAAACTGGAATCACAGCAGCCCCACTCGCCCCAGGTGATGCTGCTGCACCCACCCCAGAGTCATGGGCACCCCCCCGCAAAGTGCAGTGCCCCAGAGTGGGGTGCCTGCATTCTCAGCTTCCACACCCTTACCCTACCCCTACATTGGACACCCCCAAGCTCTCAGTGACCCCGACTGTCTCCTGACTTACTGGTGGAGTTCAATCTTATCCCTCCCAGCAGCTCCCCTTCCACTCCACCGGGGAACTGAAGATTTTCCTGGCCGCGATCTGAGACCTCCATGAGTGGAGAGAAGAATGGTCTATGTCTCTTCCCCCAGCAGCTCAGACTACTCCCAGCTCCCCATCCCCCCTTTCCCCAGGGGAGCTGGGGAATTCCTGCCAAGCACCTTGAATAGGAGGGGCCTACAGAGGGCAGCGCCAGGGTCCAGCGGGGTTGAGGGGTTCCTGCTCTGCCCCTGCCTGTCCCCACCCAGTACTGCCCTCCCATCCTCTCATCTATTTCCCTGCTGGACACAGAAGATCTTTTATTTTCTATTATTTATAACCTGAGACTTAGGCCCCCTGTTCTTTATTTCCCATTAACTTGAGTGACCTGTGTGAGAGACAGACAGATGCCCCATGAGGATGGCTGGACAAGAACTTTTACTTTTTATTACATAAAAATATTAAAAGTAAATAAATATATAAAATTTTAa
>NM_001387200.1
GGCGACGCGCACGCGCGCCAGCCCGGCTCGCGCCCTCTCGCTTTCCTCCAGCCGCGAGACCCCCTCCCCTTCCGCCTCGCGGCGCTTCCTCGCGCCGCGGTCTTCTCTCTCCACCCCCGACACCGCGGGGCTCCCCCCGCCCGCCCACGGCGGGCCCCGGCTGCCCGATCCCCCTCGCTTCCCGCGCTCTCCAGCGGGGCCCCAGCCCCGGCCCCCTCTCTCCCTCCCTTCTCTCTAATTCCCCTTCCGGACGCTGCCATCATGTTGAAGCCTCAGCCGCTACAACAGCCCTCCCAGCCCCAGCAGCCGCCCCCCACGCAACAGGCCGTGGCCCGTCGGCCCCCCGGGGGCACCAGCCCTCCCAACGGCGGCCTCCCGGGGCCGCTGGCCACCTCTGCGGCTCCTCCCGGGCCTCCAGCGGCCGCCTCCCCCTGCCTGGGGCCTGTGGCCGCTGCCGGGAGCGGGCTCCGCCGGGGAGCCGAAGGCATCTTGGcgccgcagccgccgccgccgcagcAACACCAGGAGAGGCCGGGGGCAGCCGCCATCGGCAGCGCCAGGGGACAGAGCACAGGAAAGGGACCCCCACAGTCACCTGTGTTTGAAGGCGTCTACAACAATTCCAGAATGCTGCATTTCCTTACAGCTGTTGTGGGCTCCACTTGTGATGTAAAGGTGAAAAATGGTACCACTTATGAGGGTATCTTCAAGACGCTAAGCTCAAAGTTTGAACTAGCCGTGGATGCTGTGCACCGGAAAGCATCTGAGCCAGCAGGTGGCCCTCGTCGGGAGGACATTGTGGACACCATGGTGTTTAAGCCAAGTGATGTCATGCTTGTTCACTTCCGAAATGTTGACTTCAACTATGCTACTAAAGACAAGTTCACCGATTCAGCCATTGCCATGAACTCGAAAGTGAATGGGGAACACAAAGAGAAGGTGCTTCAGCGCTGGGAGGGGGGTGACAGCAACAGCGACGACTATGACCTCGAGTCTGACATGTCCAATGGATGGGACCCCAATGAAATGTTCAAGTTCAATGAGGAGAACTACGGTGTGAAGACTACCTATGATAGCAGTCTTTCTTCTTATACGGTGCCCTTAGAAAAGGACAACTCAGAAGAGTTTCGTCAGCGAGAGCTGCGTGCGGCCCAGTTGGCTCGAGAGATTGAATCAAGCCCCCAGTACCGCCTACGGATCGCCATGGAGAACGACGATGGGCGCACTGAAGAGGAGAAGCACAGTGCAGTCCAGCGGCAGGGCTCAGGGCGGGAGAGCCCCAGCTTGGCATCCAGGGAGGGGAAGTATATCCCTCTGCCTCAACGAGTCCGGGAAGGTCCCCGGGGAGGAGTTCGATGCAGCAGCTCTCGGGGCGGTCGGCCTGGCCTTAGCTCTTTGCCACCTCGTGGCCCTCACCATCTGGACAACAGCAGCCCTGGCCCAGGTTCTGAGGCCCGTGGTATCAATGGAGGCCCTTCCCGCATGTCCCCAAAGGCACAACGGCCTCTGAGAGGTGCCAAGACTCTGTCTTCGCCCAGTAATAGGCCTTCTGGAGAAACTTCTGTTCCACCTCCTCCTGCAGCTCCCCCTTTTCTTCCAGTGGGCCGGATGTATCCCCCGCGTTCTCCCAAGTCTGCTGCCCCTGCCCCAATCTCAGCTTCCTGTCCAGAGCCTCCCATCGGCTCGGCAGTGCCAACCTCTTCAGCCTCCATCCCTGTGACCTCATCAGTCTCAGATCCTGGAGTGGGCTCCATTTCTCCAGCTTCTCCAAAGATCTCCCTGGCCCCCACAGATGTCCCTGGTCTTCAGAATGAACAGAAACGATTCCAACTGGAAGAACTGAGAAAGTTTGGGGCCCAGTTTAAGCTTCAGCCCAGTAGCTCCCCTGAGAACAGCCTGGATCCTTTTCCTCCCCGGATCTTAAAGGAGGAGCCCAAAGGAAAGGAGAAAGAGGTTGATGGTCTGTTGACTTCAGAGCCCATGGGGTCTCCCGTCTCCTCCAAGACAGAGTCCGTATCGGATAAGGAGGACAAACCACCCCTGGCACCATCAGGAGGCACTGAGGGGCCAGAGCAGCCCCCACCACCTTGTCCAAGCCAAACTGGCAGCCCCCCGGTGGGCCTCATCAAGGGAGAAGACAAAGATGAGGGCCCTGTTGCTGAACAAGTAAAGAAATCAACGTTGAACCCTAATGCTAAGGAGTTCAATCCTACAAAGCCTCTGCTGTCTGTGAATAAATCCACCAGTACCCCAACTTCTCCGGGGCCCCGGACTCATTCAACTCCCTCCATCCCGGTGCTGACAGCAGGCCAGAGTGGGCTATACAGCCCCCAGTACATCTCCTACATACCTCAGATCCACATGGGACCAGCTGTGCAGGCACCTCAGATGTATCCATATCCTGTATCCAATTCAGTGCCTGGGCAGCAGGGCAAGTACCGGGGAGCAAAAGgctcccttcctccGCAGCGCTCGGACCAACACCAGCCAGCCTCAGCCCCGCCGATGATGCAGGCCGCCGCGGCTGCTGGCCCGCCTCTGGTGGCTGCCACGCCCTATTCTTCCTACATCCCCTACAACCCTCAGCAGTTCCCAGGCCAGCCAGCCATGATGCAGCCCATGGCCCACTACCCCTCACAGCCGGTGTTTGCCCCCATGCTTCAGAGCAACCCACGCATGCTGACGTCGGGCAGCCATCCCCAGGCCATCGTGTCATCCTCTACCCCTCAGTACCCTTCTGCAGAGCAGCCTACCCCCCAAGCCCTTTATGCCACTGTTCACCAGTCCTACCCACACCATGCCACACAGCTCCATGCCCACCAGCCGCAGCCGGCTACCACGCCTACTGGAAGCCAGCCGCAGTCCCAGCATGCGGCCCCCAGTCCTGTCCAGCATCAGGCGGGGCAGGCCCCACACTTGGGCAGTGGACAGCCACAGCAGAATCTGTACCACCCAGGGGCCCTGACAGGCACGCCGCCCTCTCTGCCACCGGGACCTTCTGCCCAGTCCCCTCAGAGCAGCTTCCCCCAGCCAGCCGCTGTGTATGCCATCCACCACCAGCAGCTGCCCCACGGCTTCACCAACATGGCCCATGTTACCCAGGCCCATGTCCAAACTGGAATCACAGCAGCCCCGCCCCCTCACCCTGGGGCTCCCCACCCGCCCCAGGTGATGCTGCTGCACCCACCCCAGAGTCATGGGGGGCCCCCCCAAGGCGCGGTGCCCCAGAGTGGGGTGCCTGCACTCTCAGCTTCCACACCCTCACCCTACCCCTACATCGGACACCCCCAAGCTCTCAGTGACCCCGACTGTCTCCTGACTTAGCCGAGCTCCCCTTCCACCCCCCGGGGAACTGAAGATTGTCCTGGCCGCGACCTGAGACCTCCATGAGTGGAGGGAAGAGTGATCTATGTCTCTTCCCCCAGCAGCTCGGACCACTCCCAGCCCCCCATCCCCCCGTTCCCCAGGGGAGCTGGGGAATTCCTGCCAAGCACCTTGAATGGGAGGGGCCTCACAGAGGGCAGGGCCAGGGTCCAGCAGGGGTGGGGGGTTCCTGCTCTGCCCCTGCCCGTCCCCACCCAGTCTTGCCCTCCCATCCTCTCATCTATTCCCCCGCTGGAGACGGAAGATCTTTTATTTTCTATTATTTATAACTTCAGACTTGGGCCCCCTGTTCTTTCTTTCCCATTAACTTGAGTGACCTGTGTGAGAGACAGACAGATGCCCCACGAGGATGGCTGGACAAGGACTTTTACTTTTTATTACATaaaaatattaaaaaataaataaaaaaaataaaaTTTTAAACTAA

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