Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC101137282P3
Plot displaying the genomic locations of a retrocopy (in chr2A) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chr2A:58043044-58044974  UCSC
Strand +
Parental Sequence XM_004050786.3
Parental seq. overlap 1478 bp
Parental seq. overlap (%) 79.2%
Genomic Region Intergenic
Retrocopy Summary LOC101137282P3, located on chr2A:58043044-58044974, is a retrocopy of the parental gene LOC101137282. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC101137282
Full Name N/A
Also known as LOC101137282
Coordinate chr11:7734127-7747554
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens LDHAP3
Chimpanzee Pan troglodytes LDHAP2
Bonobo Pan paniscus LDHAP2
Orangutan Pongo abelii LDHAP3
Gibbon Nomascus leucogenys LOC100604698P5
Green monkey Chlorocebus sabaeus LOC103217070P3
Crab-eating macaque Macaca fascicularis LOC102118498P5
Rhesus Macaca mulatta LDHAP5
Golden snub-nosed monkey Rhinopithecus roxellana LOC104667647P12
Marmoset Callithrix jacchus LDHAP24
Baboon Papio anubis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC101137282P3
ATGCATTCCCAGTTCCTTTTTGTTCCAAGTCCAATATTGCAACTCTTAAGGATCAGCTGATTCATAATCTTCTAAAAGAAGAACAGACCCCCCCATAAGATTACAGTTGTTGGGGTTTGTGCTGTTGGCATGGTCTGTGCCATCAGTATCTTAATTAAGGACTTGGCAGATGAACTTGCTCTTGTTGATGTCGTGGAAGACAAATTGAAAGGAGAGATAACGGATCTCCAACATGGCAGCCTTTTCCTTAGAACACTAAAGATTATCTCTGGCAAAGACTATAATGTAACTGCAAACTCCAAGCTGGTCATTATCATGTCTGGGGCAGGTCAGCAAGAGGGAGGAAGCTGTCTTAAATAGGACCAGCATAACGTGAACATCTTTAAATTCATCATTCCTAATGCTGTAAAATACAGCCTGAACAGCAAGTTGCTTATTGTTTCAAATCCAGTGGGTATCTTGACCTATGTGGCTTGGAAGATAAGTGGCTTTCCCAAAAACCGTGTTATTGGAAGTGGTTGCAATCTGGATTCAGCCCAATTCGGTTACCTGATGGGGGAAAGCTGGGAGTTCACCCATTAAGCTGTCATGTGTGGGTCCTTGGGGAACATGGAGATTCTAGTGTGCCTTTATGGAGTGGAGTGAATGTTGCTGGTGTTTCCCTGAAGACTCTGCACTCACATTTAGGGACTGATACAGATAAAGAACAGTGGAAAGAGGTTCACAAGCAGGTGGTTGAGAGTCCTTACAAGGTGATCAAACTGAAAGGCTACACATCCTGGGCCATTGGACTCTCACCATTGGACTCTGTGTGGCAGATATGGCAGAGAATATAATGAAGAATCTTAGGCGGGTGCACCTAATTTCCGCCATGATTAAGGGTTTCTATGCAATAAAGGATGATGTCTTCCTTAGTGTTGCTTGCATCTTGGGACAGAATGGAATCTCAGACCTTGTGAAGGTGACTCTGACTCCTGAGGAAGAGGCCCTTTTGAAGAAGAGTGCAGATACACTTTGGGGGATCCAAAAAGAGCTGCAAcAGAGCTGCAATTTTAAAGTCTTCTGATGTCATCCATTTCACTGTCTAGGCTACAACAGGATTTTAGTTGGAGGCTGTGTATGTTGTCCTTTTTTCTGGTCTGTGATTATAGCAGTAATATTAAGATGGACTGGGAAAAACATCAATTCCTAAAGTTAGAAACAGAAATGGTTTGTAAAATCCTGCAGCTATATCCTAATGCTGGATGGTACTAATCCTGTGTAGTCCCAAACTGGTTAGTCTGAAATAGTTCTATGACCTCTGAGGCACCACTGCCACTGCTGCACATGCTGCAGTTGCCCCTTGAGTCAGATGGATGTTTACCGTGTGTTTTATAACTTCCTGGCTCCCTCACTGAACAATGACTAGTCCAATATTTTTTCCCAGTCAGTCACATCCTAGGATCCAGTGTATAAATCCAATATTGCATGTCTTGTACATAATTGTTCCAAAGGATCTTATTTTGTGAACTAGATATATCAGTAGTGTACATTACAATATAATGTAAAAGGACCAACATATAAACAGTGCAACCAACTATCCAAGTGTCGTACCAACTAAAACCCCCAATAAACCTTGAACAGTGA
>XM_004050786.3
GCCGGTCGGTTGTCTGGCTGCGCGCGCCACCCGGGCCTCTCCAGTGCCCCGCCTGGCTCGGCATCCACCCCCAGCCCGACTCACACGTGGGTTCCCGCACGTCCGCCGGCCCCCCCCGCTGACGTCAGCATAGCTGTTCCACTTAAGGCCCCTCCCGCGCCCAGCTCAGCGTGCTGCAGCCGCTGCCGCCGATTCCGGATCTCATTGCTACGCGCTCCCGACGACCGCCCGACGTGCATTCCCGATTCCTTTTGGTTCCAAGTCCAATATGGCAACTCTAAAGGATCAGCTGATTCATAATCTTCTAAAAGAAGAACAGACCCCCCAGAATAAGATTACAGTTGTTGGGGTTGGTGCTGTTGGCATGGCCTGTGCCATCAGTATCTTAATGAAGGACTTGGCAGATGAACTTGCTCTTGTTGATGTCATCGAAGACAAATTGAAGGGAGAGATGATGGATCTCCAACATGGCAGCCTTTTCCTTAGAACACCAAAGATTGTCTCTGGCAAAGACTATAATGTAACTGCAAACTCCAAGCTGGTCATTATCACGGCTGGGGCACGTCAGCAAGAGGGAGAAAGCCGTCTTAATTTGGTCCAGCGTAACGTGAACATCTTTAAATTCATCATTCCTAATGTTGTAAAATACAGCCCGAACTGCAAGTTGCTTATTGTTTCAAATCCAGTGGATATCTTGACCTACGTGGCTTGGAAGATAAGTGGTTTTCCCAAAAACCGTGTTATTGGAAGTGGTTGCAATCTGGATTCAGCCCGATTCCGTTACCTGATGGGGGAAAGGCTGGGAGTTCACCCATTAAGCTGTCATGGGTGGGTCCTTGGGGAACATGGAGATTCCAGTGTGCCTGTATGGAGTGGAATGAATGTTGCTGGTGTCTCTCTGAAGACTCTGCACCCAGATTTAGGGACTGATAAAGATAAGGAACAGTGGAAAGAGGTTCACAAGCAGGTGGTTGAGAGTGCTTATGAGGTGATCAAACTCAAAGGCTACACATCCTGGGCTATTGGACTCTCTGTAGCAGATTTGGCAGAGAGTATAATGAAGAATCTTAGGCGGGTGCACCCAGTTTCCACCATGATTAAGGGTCTTTACGGAATAAAGGATGATGTCTTCCTTAGTGTTCCTTGCATTTTGGGACAGAATGGAATCTCAGACCTTGTGAAGGTGACTCTGACTTCTGAGGAAGAGGCCCGTTTGAAGAAGAGTGCAGATACACTTTGGGGGATCCAAAAGGAGCTGCAATTTTAAAGTCTTCTGATGTCATATCATTTCACTGTCTAGGCTACAACAGGATTCTAGGTGGAGGTTGTGCATGTTGTCCTTTTTATCTGATCTGTGATTAAAGCAGTAATATTTTAAGATGGACTGGGAAAAACATCAACTCCTGAAGTTAGAAATAAGAATGGTTTGTAAAATCCACAGCTATATCCTGATGCTGGATGGTATTAATCTTGTGTAGTCTTCAACTGGTTAGTGTGAAATAGTTCTGCCACCTCTGACGCACCACTGCCAATGCTGTACGTACTGCATTTGCCCCTTGAGCCAGGTGGATGTTTACCGTGTGTTATATAACTTTCTGGCTCCTTCACTGAACATGCCTAGTCCAACATTTTTTCCCAATGAGTCACATCCTGGGATCCAGTGTATAAATCCAATATCATATGTCTTGTGCATAATTCTTCCAAAGGATCTTATTTTGTGAACTATATCAGTAGTGTACATTACCATATAACGTAAAAAGATCTACATACAAACAATGCAACCAACTATCCAAGTGTTATACCAACTAAAACCCCCAATAAACCTTGAACAGTGA

Publications

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