Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100604698P5
Plot displaying the genomic locations of a retrocopy (in chr19) and its respective parental gene (in chr15). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr19:44900664-44902602  UCSC
Strand -
Parental Sequence XM_003254293.4
Parental seq. overlap 1486 bp
Parental seq. overlap (%) 79.5%
Genomic Region Intergenic
Retrocopy Summary LOC100604698P5, located on chr19:44900664-44902602, is a retrocopy of the parental gene LOC100604698. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100604698
Full Name N/A
Also known as LOC100604698
Coordinate chr15:79245675-79258283
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens LDHAP3
Chimpanzee Pan troglodytes LDHAP2
Bonobo Pan paniscus LDHAP2
Gorilla Gorilla gorilla LOC101137282P3
Orangutan Pongo abelii LDHAP3
Green monkey Chlorocebus sabaeus LOC103217070P3
Crab-eating macaque Macaca fascicularis LOC102118498P5
Rhesus Macaca mulatta LDHAP5
Golden snub-nosed monkey Rhinopithecus roxellana LOC104667647P12
Marmoset Callithrix jacchus LDHAP24
Baboon Papio anubis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100604698P5
GACGTGCATTCCCAATTGCTTTTGGTTCCAAGTCCAATATTGCAACTCTCAAGGATCAGCTGACTCATAATCTTCTAAAAGAAGAGCAGATCCCCCCATAAGATTACAGTTGTTGGGGTTTGTGCTGTTGCCATGATCTGTACCATCAGTATCTTAATGAAGGACTTGGCAGATGAACTTGCTCTTGTTAATGTCATGGAAGACAAATTGAAGAGAGAGATAATGGATCTCCAACATGGCAGCCTTTTCCTTAGAACACCAAAGATTATCTCTGGCAAAGGCTATAATGTAACTGCAAACTCCAAGCTGGTCATTATCACGTCTGGGGCACATCAGCAAGAGGGAGAAAGCCGTCTTAAATAGGACCAGCATAACATGAACATCTTTAAATTCATCATTCCTAATGTTGTAAAATACAGCCCGAACTGCAAGTTGCTTATTGTTTCAAATCCAGTGGATATCTTGACCTATGCGGCTTGGAAGATAAGTGGCTTTCCCAAAAACCGTGTTATTGGAAGTGGTTGCAGTCTGGATTCAGCCCAATTCGGTTACCTGATGGGGGAAAGCTGGGAGTTCACCCATTAAGCTGTCATGGGCGGGTCCTTGGGGAACATGGAGATTCTAGTGTGCCtttatggagtggagtgaatgTTGCTGGTGTTTCCCTGAAGACTCTGCACTCACATTTAGGGACTGATACAGATAAGGAACAGTGGAAAGAGGTTCACAAGCAGGTGGTTGAGAGTCCTTACAAGGTGATCAAACTGAAAGGCTACACATCCTAGGCCATTGGACTCTCCCCATTGGACTCTATGTGGCAGATCTGGCAGAGAGTATAATGAAGAATCTTAGGCGGATGCACCCAATTTCCACCACGATTAAGGGTTTCTATGGAATAAAGGATGATGTCTTCCTTAGTGTTGCTTGCATCTTGGGACAGAATGGAATCTCAGACCTTGTGAAGGTGACTCTGACTCCTGAGGAAGAGGCCCGTTTGAAGAAGAGTGCAGGTACACTTTGGGGGATCCAAAAAGagcacaatcagagcTGCAATTTTAAAGTCTTCTGATGTCATCCATTTCACTATCTAGGCTACAACAGGATTTTAGTTGGAAGTTGTGCGTGTTGTCCTTTTTTCTGGTCTGTGATTATAGCAGTAATATTAAGACGGACTGGGAAAAACATCAATTCCTAAAGTTAGAAACAGAAATGGTTTGTAAAATCCTGCAGCTATATCCTAATGCTGGATGGTACTAATCCTGTGTAGTCCCAAACTGGTTAGTCTGAAATAGTTCTATGACCTCTGAGGCACCACTGCCAATGCTGCACATGCTGCAGTTGCCCCTTGAGCCAGATGGATGTTTATCGTGTGTTTTATAACTTGCTGGCTCCCTCACTGAACAATGACTAGTCCAACATTTTTCCCAATCAGTCACATCCTGGGATCCAGTGTATAAATCCAGTATTGCATGTCTTGTACATAATTGTTCCAAGGATCTTATTTTGTGAACTAGATATATCAGTAGCGTACATTACAATATAATGTAAAAAGACCAACATATAAACAGTGCAACCAACTATCCAAGTGTCGTACCAACTAAAACCCCCAATAAACCTtgaacagtgaa
>XM_003254293.4
GCCGGTCGGTTGTCTGGCTGCGCGCGCCACCCGGGCCTCTCCAGTGCCCCGCCTGGCTCGGCATCCACCCCGCAGCCCGACTCACACGTGGGTTCCCGCACGTCCGCCGGCCCCCCCCGCTGACGTCAGCACAGCTGTTCCACTTAAGGCCCCTCCCGCGGCCAGCTCAGAGTGCTGCAGCCGCTGCCGCCGATTCCGGATCTCATTGCCACGCGCCCCAGACGACCTTCCGACGTGCATTCCCGATTCCTTTTGGTTCCAAGTCCAATATGGCAACTCTCAAGGATCAGCTGATTCATAATCTTCTAAAGGAGGAACAGACCCCCCAGAATAAGATTACAGTTGTTGGGGTTGGTGCCGTTGGCATGGCCTGTGCCATCAGTATCTTAATGAAGGACTTGGCAGATGAACTTGCTCTTGTTGATGTCATCGAAGACAAATTGAAGGGAGAGATGATGGATCTCCAACATGGCAGCCTTTTCCTTAGAACACCAAAGATTGTCTCTGGCAAAGACTATAATGTAACTGCAAACTCCAAGCTGGTCATTATCACGGCTGGGGCACGTCAGCAAGAGGGAGAAAGCCGTCTTAATTTGGTCCAGCGTAACGTGAACATCTTTAAATTCATCATTCCTAATGTTGTAAAATACAGCCCGAACTGCAAGTTGCTTATTGTTTCAAATCCAGTGGATATCTTGACCTACGTGGCTTGGAAGATAAGTGGTTTTCCCAAAAACCGTGTTATTGGAAGTGGTTGCAATCTGGATTCAGCCCGATTCCGTTACCTGATGGGGGAAAGGCTGGGAGTTCACCCATTAAGCTGTCATGGGTGGGTCCTTGGGGAACATGGAGATTCCAGTGTGCCtgtgtggagtggaatgaatgttGCTGGTGTCTCTCTGAAGACTCTGCACCCAGATTTAGGGACTGATAAAGATAAGGAACAGTGGAAAGAGGTTCACAAGCAGGTGGTTGAGAGTGCTTATGAGGTGATCAAACTAAAAGGCTACACATCCTGGGCCATTGGACTCTCTGTAGCAGATTTGGCAGAGAGTATAATGAAGAATCTTAGGCGGGTGCACCCAGTTTCCACCATGATTAAGgGTCTTTATGGAATAAAGGATGATGTCTTCCTTAGTGTTCCTTGCATTTTGGGACAGAATGGAATCTCAGACCTTGTGAAGGTGACTCTGACTTCTGAGGAAGAGGCCCGTTTGAAGAAGAGTGCAGATACACTTTGGGGGATCCAAAAGGAGCTGCAATTTTAAAGTCTTCTGATGTCATATCATTTCACTGTCTAGGCTACAACAGGATTCTAGTTGGAGGTTGTGCATGTTGTCCTTTTTATCTGATCTGTGATtaaagcagtaatattttaagaTGGACTGGGAAAAACATCAACTCCTGAAGTTAGAAATAGGAATGGTTTGTAAAATCCACAGCTATATCGTGATGCTGGATGGTGTTAATCGTGTGTAGTCCTAAACTGGTTAGTGTGAAATAGTTCTGCCACCTCTGACACACCACTGCCAATGCTGTACGTGCTGCATTTGCCCCTTGAGCCAGGTGGATGTTTACCGTGTGTTATATAACTTCCTGGCTCCTTCACTGAACATGCCTAGTCCAACATTTTTTCCCAATCAGTCACATCCTGGGATCCAGTGTGTAAATCCAATATCATATGTCTTGTGCATAATTCTTCCAAAGGATCTTATTTTGTGAACTATATCAGTAGTGTACATTACCATATAACGTAAAAAGATCTCCATATAAACAATGCAACCAACTATCCAAGTGTTATACCAACTAAAACCCCCAATAAACCTTGAACAGTGA

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