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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC109024078P3
Plot displaying the genomic locations of a retrocopy (in chr19) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chr19:17738215-17738395  UCSC
Strand +
Parental Sequence XM_031004445.1
Parental seq. overlap 157 bp
Parental seq. overlap (%) 9.8%
Genomic Region Intragenic (ZNF729)
Retrocopy Summary LOC109024078P3, located on chr19:17738215-17738395, is a retrocopy of the parental gene LOC109024078. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC109024078
Full Name N/A
Also known as LOC109024078
Coordinate chr19:18696018-18721662
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Gibbon Nomascus leucogenys LOC100607920P1
Green monkey Chlorocebus sabaeus LOC103234268P3
Crab-eating macaque Macaca fascicularis LOC102128845P3
Rhesus Macaca mulatta ZNF195P4
Baboon Papio anubis LOC103880007P5
Golden snub-nosed monkey Rhinopithecus roxellana LOC104669314P1
Sheep Ovis aries LOC114118023P1
Tasmanian Devil Sarcophilus harrisii LOC100917187P4
Opossum Monodelphis domestica LOC100616802P19
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Orangutan Pongo abelii Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC109024078P3
GAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAGTCAGTCCTCAATCCTTACTAAACATAAGATAATTCATTCTGTAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAACCAGTCCTCACACCTTACTAGACACAAAACAATTCATACTGGAGAGAAACCCTACAAA
>XM_031004445.1
ATGCCCCTCACCAGCTTTTTGAAGCACATCTTGACCTTTTGTCTTTCTGTTCCCTGGGATGAAAACTCATCTTCAGTGCTGTCTACAACAAAAGAGAAACATCATGTTACTAAAACCTCAGGAACAGAGATTGCAGATTGGGCTAAGATTGTACACTTTCTTAAGGATGATCTGCATGGAAAAGCAGCAAACAATTTCAGAAAGATACAAGAAAAAATGCCTCTAATGGTCCAACCTCTGACCACATCTTCCATCACTCAGGGCCTGAGAAGGCGGGGTCTTAAACGTTATCCAATCAGGGGCGCTGTCCTGGGAACTGTCCAATCAGACACACAGCTGGAGCGAACAGGGCGGCTTCCGAGGCCCAGCCTCTGTGGCCCTATGACCTGCAGGTATTGGACATTCACAACTGAGACACGAGGACCCCCTGGAAGCCTAGAAATGGGACTGTTGACATTTAGGGATGTGGCCATAGAATTCTCTCTGGAGGAGTGGCAGTACCTGGACACTGCACAGAAGAATTTATATAGGAAGATGATGTTAGAGAACTACATAAACCTGGCCTTCCTGGGTATTGCTTTCTCTAAGCCAGACCTGATCACCTGTCTGGAGCAAGGGAAAGAGCCCTGGAATATGAAGCGACATGCGATGGTGGATGAACCCCCAGGTATGCGTTCTCATGTTGCTCAAGACCTTTGGCCAGAACAGGGCATGGAAGATTCTTTTCAAAAAGTAATACCAAGAAGATATGAAAAATGTGGACATCAGAATTTACAGTTAAGAAAAGGTCAAAGTGTGGATGAGCTTAAGGTGCACAAAGGAAGTTATAATGGACTTAACCTGTGTTACACAACTACCCAGAGCAAAGTATTTCAATGCGGTAAATGTTTGAAAGTCTTTTATAAATTTGTAAATTCAAACAGCATAAGACACACTGGAAGGAAACCTTCCAAATGTAAAAAATGTGTCAAATCATTTTGCATGCTTTCACACAAAACCCAGCATAAAAGCATTTATACTACAGGGAAGTCCTACAAATGTAAAGAATGTGGAAAAACCTTTAATTGGTCTTCAACCCTTACTAATCATAAGAAAATTCATACTGAAGAAAAACCCTACAAATGTGAAGAATATAGAAAAGCTTTTAATCTATCCTCAAATCTTACTACACATAAGATAATTCATATTGGAGAGAAATCTTGTAAGTGTGAAGAATGTGGCAAAGCCTTTAGCTCGTCCTCAACTCTTACTAAACATAAGATAATCCATACTGAAGAGAAACCCTACAAATTTTATACTGGAGTAAAACCCTACAAATGTGAAGAATGTGGGAAAGCCTTTTTCTCATCCTCATCCCTAACTACACATAAGAAAATTCATACTGGACAGCAACCCTACAAATGGAAAAAATTTGGCAAAGCCTTTAACCAGTCCTCACTTATTACTACAGATAAGATTATTCATATTGGAGAGAAACTCTACAAACCTGAAAGAAAAGACAATGCTTTTGACAACACCTCAAACTTTTCTAAACATAAAAACATGTTGCCGACAAATTCTAGAAATGTGAAGAATGTGACCAAGCCTTTAAATGATTGTCACACTTGA

Publications

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