Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ZNF195P4
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr3:57448117-57448335  UCSC
Strand -
Parental Sequence XM_028833083.1
Parental seq. overlap 179 bp
Parental seq. overlap (%) 6.2%
Genomic Region Intergenic
Retrocopy Summary ZNF195P4, located on chr3:57448117-57448335, is a retrocopy of the parental gene ZNF195. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ZNF195
Full Name zinc finger protein 195
Also known as -
Coordinate chr14:3325211-3350986
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Gorilla Gorilla gorilla LOC109024078P3
Green monkey Chlorocebus sabaeus ZNF429P1
Crab-eating macaque Macaca fascicularis ZNF195P2
Baboon Papio anubis LOC101000404P2
Golden snub-nosed monkey Rhinopithecus roxellana LOC104669310P6
Marmoset Callithrix jacchus LOC100400163P3
Rabbit Oryctolagus cuniculus LOC100340194P2
Cow Bos taurus LOC112442207P3
Panda Ailuropoda melanoleuca SUMO2P10
Greater mouse-eared bat Myotis myotis ZNF420BP1
Opossum Monodelphis domestica LOC100015925P17
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Pig Sus scrofa Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ZNF195P4
TCATACTGGAGAGAAACCCTATAAATGTGAAGAATGTGGCAAAGCTTTTAACCAATCCTCAAACCTTACTACACATAAGAAAATTCATACTTCAGAGAAACCCTACAAATGTGAAGAATGTGGCAAATCCTTTAACCAGTTCTCATCTCTTAATATACATAAGATAATTCATACTGGAGAGAAACCCTACAAATGTGGAGATTATGGCAAAGCTTTCAA
>XM_028833083.1
GGGCCTTTGTCCAGACAGAGTTCCACTTCCTGTCCCCGCCGCTCTGCGTCCTCTGCTAGCCGTTGGCCGTGTGACCCGACCCGCAGGCACCGGGAGATCCAGAAGTGAAACGTCAGGCTCCCTGGAGACCAAGAGATGTGCTTTTAGAGACATCGCATCCAGCAACCTGTTTCTCAGTCCTGTGGGTCTAATAGTTGCTTCACAAGCCACAAGAAAGTGAGGATAAACGCAACAATGGAAAGTACCTCCGCACTGTACTTCATCCTCTCTGTATCCCTTCCATCGGTGTGATTTGTCCAGAGATCTTTCCTAAGAGGAAATCCCAGAGAAGCAGGAGAAAGAGAAAGAAATGGCTGGTGCTCAGACACTGTTGACGTTCAGGGATGTGGCCATAGAATTCTCCCTGGAGGAGTGGAAATGCCTGGACCCTGCTCAGCAGAATTTGTACAGGGATGTGATGTTGGAGAACTACAGAAACTTGTTCTCCATTGGTCTCACTGTCTCTAAGCCAGGCCTGATCACCTGCCTGGAGCAAAGAAAAGAGCCCTGGAATGTGAAGAGACAGGAGGCAGTAGACGGACATCCAGagatgggatttcaccatgctactcaggcttgtctcaaactcctgggctcaagcgatctgcccgcctcagcctcccaaagtgctgagattacaggtgtgaaccactgtgcccagcctgccctcaaggtttctgtggacaaattcactgCTATGTCTTCTCATGTTACCCAAGACCTTTTGCCAGAGCAGGGCATACAAGATGCATTCCCAAAATCAATACTGAGAGGATATGGAAATTGTGGCCTTGATAATTTACATTTAAGGAAAGACTGGGAAAGTTTAAATGAGTGTAAGTTGCAAAAAGATTATAATGAACTTAACCAATGTTCATCAACTACCCATAGCAAAATCTTTCAATGTAATAAATACGTTAAAATCTTTAATAACTTTTCAAATTTGCATAGACATAATATAAGTAATACTGGAGAGAAACCTTTCAAATGTCAAGAATGTGGCAAATCCTTTCAAATGTTCTCATTCCTAACTGAACATCAGAAAATTCACACTGGAAAAAAATTGCAAAAATGTGGAGAATGTGGCAAAACCTTTATACAGTGCTCACACTTTACTGAACATGAGAACATTGACACTGGAGAGAAACCTTACAGATGTCAAGAATGTGACAAAGTTTTTAAAACTTGCTCAGTCCTTACTAAAAATAGAATTTACGCTGGAGGGGAACATTACAAATGTGAAGAATTTGGCAAAGTATTTAACCAGTACTCCCACCTTACTGAACATGAGCGTGGTACTGAGGAAAAACCCTGCAAATATGAAGAGTGCAGCAGTGTCTTTATATCTTGCTCAAGCCTTTCTAATCAACAGCTGATTCTTGCTGGAGAGAAGCTCTCCAAATGTGAAACATGGTACAAAGGTTTTAACCACAGCCCAAATCCTTCCAAACATCAGAGAAATGAGATTGGAGGGAAACCTTTCAAATGTGAGGAATGTGACAGCATCTTCAAATGGTTCTCAGACCTTACTAAACATAAGAGAATTCACACTGGTGAGAAACCCTACAAATGTGAAGAATGTGGGAAAGCCTATACGCAGTCCTCACACCTCAGTGAACACAGGAGGATTCACACCGGAGAGAAACCCTACCAGTGTGAAGAATGTGGGAAAGTCTTCAGAACTTGCTCAAGCCTTTCTAATCACAAGAGAACTCATTCTGAAGAAAAACCCTACACGTGTGAAGAATGTGGCAACATCTTTAAGCAGTTATCAGACCTCACTAAGCATAAGAAAACCCATACTGGAGAGAAACCCTACAAATGTGACGAATGTGGAAAGAACTTTACCCAGTCCTCAAACCTTATTGTACATAAGAGAATTCATACTGGAGAGAAACCCTACAAGTGTGAAAAGTGTGGCAAAGCCTTCACCCAATTCTCACACCTGACTGTACATGAAAGCATTCATACTTGAGAAAAAAAAAATATAAAAATAGGCACAGCCTTTAGTATCTGCTCGCATCCTACTTTACATCAGTTTGGACGTAACAAAGTTATTATAAATTTAATTACTATTGAAAGACCTTTCATGAAATATAAGTCTCCAGAGCACACAAGAGTATTTCTTCTGAAAAAAAATGTTACAATTATGTTTTATACTAGATGGAAGACATGCAACAGTTGCTTAAACTTCCAGAGAATTTGTAGAGAAACCCAACAAATATCATAACTGTGGAATAACATTTGTTCAAAAACGATAGCTTAGAAAACATCAGAGTTCATACTAAAAGATATTTTGCAAATACAGTAAATGGGAAACATAAGCAAAATTCAATTTAAGTAAACATTGGAGGATTTGAAGAAGAGAGGAACAGAGCACGGACGCGTTCTAAGTAAACACTGGAGGATTTGAGGAAGAGAGGAACAGAGCACGGACACGTTCGGAAACGACAGTGAATCCGTGTGTTGAGTCTACGGGGACATCTCGACTTGAAGTAGATCGTTCATTCTTATTTAAGTTTAAAAGGAGGATGAGACTGAGTTTTTGTAGAGTTATAATTACATTCAAAATACACGTTTTTGCATTGAAAAATGTTAAATTTTTGAAAAGCGAATATTGATGTCTTTTAATCCTCGAATCAGTTCATGCTGTGTCTTCATTTCTGGTGCTGATGTGAAAACACATGGTCAGTTGTTGCTGCATCAGAGATGTGAGAAATTCTCTTCTGTTAGGTGTGCATCACTGATATACTTGTCCATGAAAGGTGAAAGACACTGAAATGTAAGATGCGTGAGTAAAATCTTGGTAGAGGCTGTTTGTGGTTGTTTTA

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