RCPedia: Rtcs

Summary

Retrocopy Name	NAA20P1	Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr10). Each line represents a retrocopy.
Species	Macaca fascicularis
Coordinates	chrX:129829456-129829604 UCSC
Strand	-
Parental Sequence	NM_001283948.1
Parental seq. overlap	122 bp
Parental seq. overlap (%)	10.3%
Genomic Region	Intragenic (HS6ST2)
Retrocopy Summary	NAA20P1, located on chrX:129829456-129829604, is a retrocopy of the parental gene NAA20. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name	NAA20
Full Name	N/A
Also known as	NAT5
Coordinate	chr10:42236033-42253348
Strand	-
Gene summary	N/A

Homology

Species	Scientific Name	Retrocopy
Human	Homo sapiens	NAA20P1
Chimpanzee	Pan troglodytes	NAA20P1
Bonobo	Pan paniscus	NAA20P2
Gorilla	Gorilla gorilla	NAA20P2
Orangutan	Pongo abelii	NAA20P2
Gibbon	Nomascus leucogenys	NAA20P1
Green monkey	Chlorocebus sabaeus	NAA20P1
Rhesus	Macaca mulatta	NAA20P1
Baboon	Papio anubis	NAA20P1
Mouse lemur	Microcebus murinus	NAA20P3
Dolphin	Tursiops truncatus	NAA20P1
Dog	Canis familiaris	NAA20P4
Cat	Felis catus	NAA20P2
Greater horseshoe bat	Rhinolophus ferrumequinum	NAA20P1
Golden snub-nosed monkey	Rhinopithecus roxellana	Without Homology
Marmoset	Callithrix jacchus	Without Homology
Mouse	Mus musculus	Without Homology
Rat	Rattus norvegicus	Without Homology
Chinese hamster	Cricetulus griseus	Without Homology
Rabbit	Oryctolagus cuniculus	Without Homology
Pig	Sus scrofa	Without Homology
Cow	Bos taurus	Without Homology
Sheep	Ovis aries	Without Homology
Horse	Equus caballus	Without Homology
Panda	Ailuropoda melanoleuca	Without Homology
Pale spear-nosed bat	Phyllostomus discolor	Without Homology
Velvety free-tailed bat	Molossus molossus	Without Homology
Greater mouse-eared bat	Myotis myotis	Without Homology
Kuhl's pipistrelle	Pipistrellus kuhlii	Without Homology
Egyptian rousette	Rousettus aegyptiacus	Without Homology
Sloth	Choloepus didactylus	Without Homology
Tasmanian Devil	Sarcophilus harrisii	Without Homology
Opossum	Monodelphis domestica	Without Homology
Platypus	Ornithorhynchus anatinus	Without Homology
Chicken	Gallus gallus	Without Homology
Turkey	Meleagris gallopavo	Without Homology
Zebra Finch	Taeniopygia guttata	Without Homology
Budgerigar	Melopsittacus undulatus	Without Homology
Painted Turtle	Chrysemys picta	Without Homology
Lizard	Anolis Carolinensis	Without Homology
Frog	Xenopus tropicalis	Without Homology
Zebrafish	Danio rerio	Without Homology
Drosophila	Drosophila melanogaster	Without Homology

Expression

Related Sequence

>NAA20P1
TTAATGGATTATATTGTGGGTAAAGCAGAAGGTTCAGTAGCTAAAGAAGAATGGCACAGTTATGCCACAGCTCTTTCTGTTGCCCAAAATTTACATATCTTGGTTTGGCTGTTAAATTCATAGAGTTATTGGAGGAAATTTCAGAAa

>NM_001283948.1
ACTTCCGGCGGCGGGGCGGGCGCTGGGTCTTGGCTAACTGGCTTCGGAAGCGGCGGCGGCGCGATGACCACGCTACGGGCCTTCACCTGCGACGACCTGTTCCGCTTCAACAACATTAACTTGGATCCGCTTACAGAAACTTATGGGATTCCTTTCTACTTACAGTACCTCGCCCACTGGCCAGAGTATTTCATAGTTGCAGAGGCACCTGGTGGAGAATTAATGGGTTATATTATGGGTAAAGCAGAAGGCTCAGTAGCCAGGGAAGAATGGCACGGGCACGTCACAGCTCTGTCTGTTGCCCCAGAATTTCGACGCCTTGGTTTGGCTGCTAAACTTATGGAGTTACTAGAGGAGATTTCAGAAAGAAAGGGTGGATTTTTTGTCGATCTCTTTGTAAGAGTATCTAACCAAGTTGCAGTTAACATGTACAAGCAGTTGGGCTACAGTGTATATAGGACGGTCATAGAGTACTATTCGGCCAGCAACGGGGAGCCTGATGAGGACGCTTATGATATGAGGAAAGCACTTTCCAGGGACACTGAGAAGAAATCCATCATACCATTACCTCATCCTGTGAGGCCTGAAGACATTGAATAACCCTGGGCAGTGGTTCTTAGGCAGATACTCTAGATACTTTATGGACAATATTATTTTCATTGGATGATTCTGGAGCTCTATTAGGAGAAAAGTAATCATTTTAAGTCTTAAAGACTTCAAGAgtgctcgcttcggcagcacatatactaaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcaaattcgtgaagcgttccatatttaaaaaaaaaaaaaaaaaaaaaaaGACTTCAAGAAAATACAGGTTATCAATTTATTTAAAATCTCATTGTTTCCAGTTAGCAATGTCATACCTATTAAAGCTGTTCACTAACAAAATTCAATCAAAAAGGCAGCTAGGTCAGAAGGAAACATCCCACTCTCATGGTTCATAATACTCACTGTATGTATGCTAGTGAAAAGATTTGCTTCAGTCTCCTCCTAAATTCTGTGCCTGAGAACCACTGCTGCATATATTTGTTTTTAAATTTTGTATTGAACTGTTAATTGAAGCTTTAAAAGCATATATGAAATGTATAAATCTAAGATGTATAATAAAATACATTGTTGACCCTA

>NM_001283948.1 

ACTTCCGGCGGCGGGGCGGGCGCTGGGTCTTGGCTAACTGGCTTCGGAAGCGGCGGCGGCGCGATGACCACGCTACGGGCCTTCACCTGCGACGACCTGTTCCGCTTCAACAACATTAACTTGGATCCGCTTACAGAAACTTATGGGATTCCTTTCTACTTACAGTACCTCGCCCACTGGCCAGAGTATTTCATAGTTGCAGAGGCACCTGGTGGAGAATTAATGGGTTATATTATGGGTAAAGCAGAAGGCTCAGTAGCCAGGGAAGAATGGCACGGGCACGTCACAGCTCTGTCTGTTGCCCCAGAATTTCGACGCCTTGGTTTGGCTGCTAAACTTATGGAGTTACTAGAGGAGATTTCAGAAAGAAAGGGTGGATTTTTTGTCGATCTCTTTGTAAGAGTATCTAACCAAGTTGCAGTTAACATGTACAAGCAGTTGGGCTACAGTGTATATAGGACGGTCATAGAGTACTATTCGGCCAGCAACGGGGAGCCTGATGAGGACGCTTATGATATGAGGAAAGCACTTTCCAGGGACACTGAGAAGAAATCCATCATACCATTACCTCATCCTGTGAGGCCTGAAGACATTGAATAACCCTGGGCAGTGGTTCTTAGGCAGATACTCTAGATACTTTATGGACAATATTATTTTCATTGGATGATTCTGGAGCTCTATTAGGAGAAAAGTAATCATTTTAAGTCTTAAAGACTTCAAGAgtgctcgcttcggcagcacatatactaaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcaaattcgtgaagcgttccatatttaaaaaaaaaaaaaaaaaaaaaaaGACTTCAAGAAAATACAGGTTATCAATTTATTTAAAATCTCATTGTTTCCAGTTAGCAATGTCATACCTATTAAAGCTGTTCACTAACAAAATTCAATCAAAAAGGCAGCTAGGTCAGAAGGAAACATCCCACTCTCATGGTTCATAATACTCACTGTATGTATGCTAGTGAAAAGATTTGCTTCAGTCTCCTCCTAAATTCTGTGCCTGAGAACCACTGCTGCATATATTTGTTTTTAAATTTTGTATTGAACTGTTAATTGAAGCTTTAAAAGCATATATGAAATGTATAAATCTAAGATGTATAATAAAATACATTGTTGACCCTA

Publications

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