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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL27AP6
Plot displaying the genomic locations of a retrocopy (in chr13) and its respective parental gene (in chrUn_NW_022154674v1). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chr13:28114587-28115068  UCSC
Strand -
Parental Sequence XM_004050656.2
Parental seq. overlap 410 bp
Parental seq. overlap (%) 34.4%
Genomic Region Intergenic
Retrocopy Summary RPL27AP6, located on chr13:28114587-28115068, is a retrocopy of the parental gene RPL27A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL27A
Full Name N/A
Also known as RPL27A
Coordinate chrUn_NW_022154674v1:4371712-4375446
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL27AP8
Chimpanzee Pan troglodytes RPL27AP6
Bonobo Pan paniscus RPL27AP7
Gibbon Nomascus leucogenys RPL27AP3
Green monkey Chlorocebus sabaeus RPL27AP2
Rhesus Macaca mulatta RPL27AP9
Baboon Papio anubis RPL27AP7
Golden snub-nosed monkey Rhinopithecus roxellana RPL27AP9
Marmoset Callithrix jacchus RPL27AP2
Orangutan Pongo abelii Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL27AP6
ACATACCATTCAGGCTGAGGAAGACCCAGAAACTTCTGGGCCATGTAAGCCACAGCCACAGCCTCATCAGCAAGCACGAAAAGCACTCCGGAGGCAGGAGTAATACTGGTGGCAAGCATCACCACAGGATCAACTTTGACAAACTTCACCTAGGTTCCTTTGGGAAAGTTGGTATAAGGGTTACCACTTAAAGAGGAACCAGAGCTCCTGCTCAAATGCCAACCCTGATAAATTGTGGACTTTGGTCAGTGTACAGACACAGGTGAATGCTGCTAAAGACAAAACGAGCTGCTCCCACCATTGATGTGGTGTGATCAGGCTACTACAAAGTTCTGGGAAACGGAAATCTACCAAAGCAACCTGTCATCATGAAGGCCAAATTCTTCAGCAGAAGAGCGGAGGAGAGGATTAAGGGTGTTGGAGGTGGGGCTTGAGTCCTGGTGGTATGAAACCACATGGATGGAGGTTTGTTAAATGCTAAT
>XM_004050656.2
AAAGCAACCAGGCATCTAAGTCCCTGAAGCAATTTAAGTTGCTCAAACTTGAGAGGACAACCAAATGATAGCAAAAGGGCAAAAGAGAAAGGAAGCTGCAGTGCCCACTCAGAAGTGTGAGAGCGGGAGAAGGCATTTCGGGAGCCGCCCGAGCTTCAGGAAACCGAGCGAGACACCAAGTGGGCACACTGAGGATTAAAGAGGGCCTCGCGGTTCCGCACTGCGGCCGGGAGACAAACCAGTAGCCACTATCACCAGCCCCGAGCAGACCACTAAGAACTGTGGAGGTGCGCGGGGCGGCTCAGGGCTGGCGCATTTGGTGAGGAGCTCAGACACCGAGGCCCTTAGGGTCGGCTTAGGCGGTTCCCTGACTAAGGCGCCAGAAAAGGGCCTGGCTCAAACAAGCACGGGCGGCGTGCAGTACAGCACACCTAGCCCCGATTCTTCAACAGTTGTCGCCCTCCGAGCCTAGCACAACGAGCCTCACCGAAACCGTACACCGCCAGCAGGACACTCCGTGAGAGGGGATCACCACCCTCAAAAAGAGGAAGCGACTAGCAGGCGCGCAATCCCGCGAGACCAAGAGGCCCCGCCCGAAGCCCGGCCTCTGTGACCGGAAGTGAGGCGTTTTGCCCCGCCCCCGTGGCCGATACCTCGCGAGACTTGGCGAAGGCCTTCCTTTTTCGTCTGGGCTGCCAACATGCCATCCAGACTGAGGAAGACCCGGAAACTTAGGGGCCACGTGAGCCACGGCCACGGCCGCATAGGCAAGCACCGGAAGCACCCCGGCGGCCGCGGTAATGCTGGTGGTCTGCATCACCACCGGATCAACTTCGACAAATACCACCCAGGCTACTTTGGGAAAGTTGGTATGAAGCATTACCACTTAAAGAGGAACCAGAGCTTCTGCCCAACTGTCAACCTTGACAAATTGTGGACTTTGGTCAGTGAACAGACACGGGTGAATGCTGCTAAAAACAAGACTGGGGCTGCTCCCATCATTGATGTGGTGCGATCGGGCTACTACAAAGTTCTTGGAAAGGGAAAGCTCCCAAAGCAGCCTGTCATCGTGAAGGCCAAATTCTTCAGCAGAAGAGCTGAGGAGAAGATTAAGAGTGTTGGGGGAGCCTGTGTCCTGGTGGCTTGAAGCCACATGGAGGGAGTTTCATTAAATGCTAACTACTTTTTC

Publications

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