Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CKS1BP1
Plot displaying the genomic locations of a retrocopy (in chr2) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr2:34234182-34234988  UCSC
Strand -
Parental Sequence XM_003259372.3
Parental seq. overlap 699 bp
Parental seq. overlap (%) 82.2%
Genomic Region Intragenic (KCTD16)
Retrocopy Summary CKS1BP1, located on chr2:34234182-34234988, is a retrocopy of the parental gene CKS1B. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CKS1B
Full Name N/A
Also known as CKS1B
Coordinate chr12:46254821-46259434
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens CKS1BP5
Chimpanzee Pan troglodytes CKS1BP1
Bonobo Pan paniscus CKS1BP1
Gorilla Gorilla gorilla CKS1BP1
Orangutan Pongo abelii CKS1BP1
Green monkey Chlorocebus sabaeus CKS1BP8
Crab-eating macaque Macaca fascicularis CKS1BP2
Rhesus Macaca mulatta CKS1BP2
Baboon Papio anubis CKS1BP2
Golden snub-nosed monkey Rhinopithecus roxellana CKS1BP1
Marmoset Callithrix jacchus CKS1BP3
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CKS1BP1
gtgcTGCTGGGAGTTGCTTGGATGTTGGCGGTGTGGGGCTGAAAGCTTGCAGACGCAGCGATCATATTGCACAAATAAATTTACTATTTGGAGAAATACAATGATGAGGGGTTTGAGTATTGGCGTGTCATGTTGCCCAAGGACATAGCCAAGCTGGTCCCTAAAACCCACTTGAATCTGAATGGAGGAATCTTGGAGTTCAGCAGAGTCTGAATCTGAATGGAGGAATCTTGGTGTTCAGCAGAGTCAGGGATGAGTCCATTACATGATCCGTGAACCAGAGCCTCACATCTTACTATTCCAGTGCCCGCTACCCAAGAAGCCAGATAAATGAAGCTGGCGAGCCACCTTCCAGCCTCGAGCTTTACACAGCTGTCCTTGCTTCCTAACATCTTTCTGATAACACTATTATGTTGCCTTCTTGTTTCTCACTTTGATAtttaaaagatgttcaacacGCTTTGTGAATGTGCTGGTAACTGTTTTGCTTCTTGAGTagagccaccaccaccacagcccAGAGAGATGAGTGCTCTGTGGGCCACAGCCTCAGCTGAGTGTGACCCCAGAAGCCACGATGTGCTCTGTATCCAGAACACAGTTGGTAGATGGAGGAAGCATCTGAGATTAAGATCATGGCTGTTACAGGGATCCTGTAaacttgctgtttttgttttttcctgccaGGTGTTGTATGTGTGGTGACTTGTGGATTTATGTTTCAATATATTGGAAACTTTCCATATTATTCAAGAAGTCTGTTCATGTTAAAAGCCTTGATTAAAGAGAAAGTTttcataaactaaa
>XM_003259372.3
GGCGGCGTGTTTGAAAgcgaggccaaagtgggtgggaGCGCGTGCTGTTGGGAGTTGCTTGGAGGTTGGCGGCGCGGGGCTGAAGGCTAGCAAATCGAGCGATCATGTCGCACAAACAAATTTACTATTCGGACAAATACGACGACGAGGAGTTTGAGTATCGACATGTCATGCTGCCCAAGGACATAGCCAAGCTGGTCCCTAAAACCCATTTGATGTCTGAATCTGAATGGAGGAATCTTGGTGTTCAGCAGAGTCAGGGATGGGTCCATTATATGATCCATGAACCAGAACCTCACATCTTGCTGTTCCGGCGCCCACTACCCAAGAAGCCAAAGAAATGAAGCTGGCAAGCTACTTTTCAGCCTCAAGCTTTACACAGCTGCCCTTACTTCCTAACATCTTTCTGATAACATTATTATGTTGCCTTCTTGTTTCTCACTTTGATATTTAAAAGATGTTCAATACACTGTTTGAATGTGCTGGTAACTGCTTTGCTTCTTGAGTAGAGCCACCACCACCATAGCCCAGCCAGATGAGTGCTCTGTGGACCCACAGCCTCAGCTGAGTGTGACCCCAGAAGCCATGATGTGCCCTGTATCCGGAACACACTTGGCAGATAAAGGAAGCATCTGAGTTTGAGACCATGGCCGTTACAGGGATCATGTAaacttcctgtttttgttttttcctcccgGGTGTTGTATGTATGGTGACTTGTGGATTTATGTTTCATTGTACTGgaaactttccattttattcaagaaatctcttcatgttaaaagccTTGATTAAAGAGGAAGTTTTTATAATCTAA

Publications

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