Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HMGB1P2
Plot displaying the genomic locations of a retrocopy (in chr1a) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr1a:75145950-75147060  UCSC
Strand +
Parental Sequence XM_003270234.4
Parental seq. overlap 962 bp
Parental seq. overlap (%) 40.9%
Genomic Region Intergenic
Retrocopy Summary HMGB1P2, located on chr1a:75145950-75147060, is a retrocopy of the parental gene HMGB1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HMGB1
Full Name N/A
Also known as HMGB1
Coordinate chr9:8704860-8710996
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HMGB1P14
Chimpanzee Pan troglodytes HMGB1P37
Bonobo Pan paniscus HMGB1P40
Gorilla Gorilla gorilla HMGB1P34
Orangutan Pongo abelii HMGB1P36
Green monkey Chlorocebus sabaeus LOC103214542P26
Crab-eating macaque Macaca fascicularis HMGB1P18
Rhesus Macaca mulatta HMGB1P20
Baboon Papio anubis HMGB1P23
Golden snub-nosed monkey Rhinopithecus roxellana HMGB1P19
Marmoset Callithrix jacchus HMGB1P38
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HMGB1P2
tcaaGTGAGAGCCAGATGGGCACTGGGTGACTCTGTGCCTCGCTGAGGAAAAATAACAGAACATGGGTAAAGGAGATCCTAAGAAGCCAAGAGACAAAATGTCATCATATGCATTTTTTGTGCAAACTTGTTGGGAGGAGCATTAAGCACCACCACCCAGATGCTTCAGTAAACTTCTCAAAGAGTTTTCTAAGAAGCGCTCAGGGAAGTGGAAGACCATGTCtgctaaagagaaaggaaaatgtgaaaatatggcAAAGGTGGACAAGGTCcattatgaaagagaaatgaaaacctgtaTTCCTCCTAAACAGGAGACAAAAACGAAGTTCAAGGATCCCAATGCACCCAAGAGGCCTCCCTTCAGCCTGAGTATCGCCCAAAAATCAAAGGGAGAACATCCTGGCCTGTCCACTGGTGATGCTGCAAAGAAACTGGGAGAGATGCGGACTAACACTGCTGCAGATGACAAACGGCCTTATGAAAAGAAGGCTGcaaagctgaaagaaaaatacagaaaggatACTGCTGCATATTGAGCTAAAGGAAAGCCTGATGCAGCAAAAAAGGGAGATGTCAaggctgaaaaaagAATAAGCTGGTTTTAGTGGTTTTGTCTATAAAGCATTTAACTCCCCTGTACACAACtcactctttttaaagaaaaaaattgaaatgtaaggctgtgtaaaatgttttaaactgtACAGTGTCTTTTTTTGTATAGTTAACACACTACCAAATGTGTCTTTAGATGGCCCTGTCCTGGTGGTATTTTCAGTAGCCACTAACCTTGCCTGGTACAGTATGGGGGTTGTAAATTGGCATGGAAATTTAAAGCAGGTTCTTGTTGGTGCACAGCAGAAATCAGTTATATACAGGGATGGTAGTTTTTTCATCTTCAGTTGTCTCTGATGTGGCTTATACAAAATAATTGTTGTTCTGTTAACTGAATACCACTctgcaattgcaaaaaaaaaaaaaaaagttgcagctGTTTTGTTGACACTCTGAATGCTTCTAAGTAAatac
>XM_003270234.4
GCCAATAGGAGCCGCGCTGGCTGGAGAGTAATGTTACAGAGCGGAGAGAGTGAGGAGGCTGCGTCTGGCTCCCGCTCTCACAGCCATTGCAGTACATTGAGCTCCATAGAGACAGCGCCGGGGCAAGTGAGAGCCGGACGGGCACTGGGCGACTCTGTGCCTCGCTGAGGaaaaataactaaacatgGGCAAAGGAGATCCTAAGAAGCCGAGAGGCAAAATGTCATCATATGCATTTTTTGTGCAAACTTGTCGGGAGGAGCATAAGAAGAAGCACCCAGATGCTTCAGTCAACTTCTCAGAGTTTTCTAAGAAGTGCTCAGAGAGGTGGAAGacCATGTCtgctaaagagaaaggaaaatttgaagATATGGCAAAGGCGGACAAGGCCCgttatgaaagagaaatgaaaacctatatcCCTCCCAAAGGGGAGACAAAAAAGAAGTTCAAGGATCCCAATGCACCCAAGAGGCCTCCttcggCCTTCTTCCTGTTCTGCTCTGAGTATCGCCCAAAAATCAAAGGAGAACATCCTGGCCTGTCCATTGGTGATGTTGCGAAGAAACTGGGAGAGATGTGGAATAACACTGCTGCAGATGACAAGCAGCCTTATGAAAAGAAGGCTGCGAAGCTGAAGGAAAAATACGAAAAGGATATTGCTGCATATCGAGCTAAAGGAAAGCCTGATGCAGCAAAAAAAGGAGTTGTCAAGgctgaaaaaagcaagaaaaagaaggaagaggaggaagatgaggaagatgaagaggatgaggaggaggaggaagatgaagaagatgaagatgaagaagaagatgatgatgatgaataagTTGGTTCTAgcgcagtttttttttttcttgtctataaagcATTTAACCCCCCTGTACACAACTcactccttttaaagaaaaaaattgaaatgtaaggCTGtgtaagatttgtttttaaactgtaCAGTGTCTTTTTTTGTATAGTTAACACACTACCGAATGTGTCTTTAGATAGCCCTGTCCTGGTGGTATTTTCAATAGCCACTAACCTTGCCTGGTACAGTATGGGGGTTGTAAATTGGCATGGAAATTTAAAGCAGGTTCTTGTTGGTGCACAGCACAAATTAGTTATATATGGGGATGGTAGTTTTTTCATCTTCAGTTGTCTCTGATGCAGCTTATACGAAATAATTGTTGTTCTGTTAACTGAATACCACTctgtaattgcaaaaaaaaaaaaaaagttgcagctGTTTTGTTGACATTCTGAATGCTTCtaagtaaatacaattttttttattagtattgTTGTCCTTTTCATAGGtctgaaatttttcttcttgAGGGGAAGCTAGTCTTTtgcttttgcccattttgaatCACATGAATTATTACAGTGTTTATCCTTTCATATAGTTAGCTAATAAAAAGCTTTTGTCTACACACCCTGCATATCATAATGGGGGTAAAATTAAGTTGAGATAGTTTTCATCCATAACTGAACATCCAAAATCTTGATCAGTTAAGAAATTTCACATAGCCCACTTAACATTTACAAACTGAAGAGTAATCAATCTACTCAAAGCATAGGATTATTAGAATCAAACATTTTGAAAGTCTGTCCTTGAAGGACTAATAGAAAAGTATGTTCTAACCTTTACATGAGGACTCTATTCTTTAACTCCCATTACCATGTAATGGCAGTTATATTTTGCAGTTCCCACATTAAAGAAGACCCGAGAATGTATCCCCAAAAGCGTGAGCTTAAAATACAAGACTGCcatattaaattttttgttgacaTTAGTCTCAGTGAAGACTATGAAAATGCTGGCTATAGATGTCTTTTCCCATTTATCTAAATATGGACTGCTCAGGAAACGAGACTTTCCATtacaagtatttttaattaattgggccagcttttaaaacaaagatgccACATTCAAAATAGGGTATATTTTCCTATATTATGGTTTGCCCCTTTATAAATCCAAGTAGATAGGAGGAAAGAAGACACCTAAACTTTGCATCTCAGTATgaattattcaatttatttgaatgatttttctttacaaaacaaaCTCATTCATTAGTCATGTTTATCTGCTTAGCAGTTTAGGGAACAATTTGGCAATTTTGTGGTTTTCGAGAATATCGTTTTCTTAAAGtgccagtattttaaaatagcGTTCTTGTAATTTTACACGCTTTTGTGATGGAGTGCTGTTTTGTTATATAATTTTGACTTGGATTCtttccatttgcatttgtttatgtAATTTCAGGAGGAATACTGAACATCTGAGTCCTGGATGATACTAATAAACTAATAATTGCAGAGGttttaaa

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