Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name LOC100579903P4
Plot displaying the genomic locations of a retrocopy (in chr18) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr18:22607665-22607916  UCSC
Strand +
Parental Sequence XM_003261572.4
Parental seq. overlap 203 bp
Parental seq. overlap (%) 42.6%
Genomic Region Intragenic (MICU1)
Retrocopy Summary LOC100579903P4, located on chr18:22607665-22607916, is a retrocopy of the parental gene LOC100579903. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100579903
Full Name N/A
Also known as LOC100579903
Coordinate chr2:95263977-95266849
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens COX7CP3
Chimpanzee Pan troglodytes COX7CP4
Bonobo Pan paniscus LOC100979972P3
Gorilla Gorilla gorilla LOC101133649P4
Orangutan Pongo abelii COX7CP3
Rhesus Macaca mulatta LOC106998836P2
Baboon Papio anubis LOC101014053P4
Marmoset Callithrix jacchus LOC100415550P7
Mouse lemur Microcebus murinus LOC109731319P4
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100579903P4
CATGTTGGAACAGGGCATCCAGAGGTTCACAACCTCTGTGGTCCACAGGAGGCATGAGGCACTATAAAGAGGGCTCAGGGAAGAACATGctattttcagtagaaaataaGTGGTGGTTACTAATTATAATGACTTTGTACTTTGGATCTGGATTTTATGCACATTTCTTTATAGTAAGACACCAACTGCTTAAGAAACACGGATGTTTAATTCATCCATGAAACAGATATGAAGAGCATTTTAAGAGGTGca
>XM_003261572.4
CCTCAAGGCTCCGCCCCATTTCCCATCTTTCCTTTCAGTCCTTGCGTACCGGGGAACAAGGTCGTGGAAAAAAAGGTCTTGGTGAGGTGCCGCCATTTCATCCGTCCTCGGTCTCTGCGCCTTTCCCAGAGCCTCCAGCAGCGCTATGTTGGGCCAGAGCATCCGGAGGTTCACAACCTCTGTGGTCCGTAGGAGCCACTATGAGGAGGGTCCTGGGAAGAATTTGCCATTTTCAGTGGAAAACAAGTGGTCGTTACTAGCTAAGATGTGTTTGTACTTTGGATCTGCATTTGCTACACCCTTCCTTGTAGTAAGACACCAACTGCTTAAAACATAAAGATGTTTCAGTTCCTCCATTTAACAGataTGAAGAGCATTTTAAGAGGTGCAGCCTCTGGAAGTGGATCAAACTAGAACTCATATGCCATACTAGATATGTTTGTCAATAAACTTATGATGTGAATGCTTAA

Publications

PMID - Link Title