Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100599068P13
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr6:61452468-61453345  UCSC
Strand +
Parental Sequence XM_003275091.4
Parental seq. overlap 596 bp
Parental seq. overlap (%) 52.8%
Genomic Region Intragenic (EIF2AK4)
Retrocopy Summary LOC100599068P13, located on chr6:61452468-61453345, is a retrocopy of the parental gene LOC100599068. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100599068
Full Name N/A
Also known as LOC100599068
Coordinate chr5:21875097-21884442
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens H3P38
Chimpanzee Pan troglodytes HIST1H3AP28
Bonobo Pan paniscus LOC100970414P20
Orangutan Pongo abelii LOC100433071P24
Green monkey Chlorocebus sabaeus LOC103232061P29
Crab-eating macaque Macaca fascicularis H3F3AP24
Rhesus Macaca mulatta LOC699443P17
Baboon Papio anubis LOC101010649P19
Marmoset Callithrix jacchus LOC100406796P25
Gorilla Gorilla gorilla Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100599068P13
AAAAAGCCGCTTGCAAGACTGCACTTTCTACTGCAGGAGTGAAGAAACCGATCATTTCAGGCCTGGTACCgtggcattctgtgaaattagaCGTTACCACAAGTCCACTGAACTGATTTGCAAACTCCTCTTCCAGCATCTGGTGAGAGAAATTGCTCAGGATTTTAAAACAGATCTGTGCTTCCAGAGTGCAGCTATTGGTGCTTTGCAGGAGGCAAGTGAGGCCTATCTGGTTGGCCTTTTTGAAAACACCAACCTGTATGCTATCTATCCATGCCAAACATGTAACAATTGTGCTGAAAGATATCCAGCTAGCATGACACATACGTGGAGAGCGTGCTTAAGAATCCACTatgggaaagaatccaCTATGATGGGAAATTTCattcccccccccaaaaaaattctCTTATTATTCCTGACACTTCTGAATGTTGCGTATTTTTTTCCCATGGGGTCAAAAGGCACCTACATATATGACTGTGAGTGGAAAAACAAGGCACAGAAATCACGTATTGGccgtttttctattttcattcatgtgtgaatttttaatataaatgggGGGGATGTAAAGCATTAATGCAGATCAAAATGTTTCAGTGAACAAGTTTCGGCAGTTCGACTTTCTAATAATTATAGATAAACCTATTACATTTTTCTGGATAATGCCAgtatctggatttttttaaaaacaagtaaat
>XM_003275091.4
ggcggggcggcGTGTGTTGGGGGATAGCCTCGGTGTCAGCCATCTTTCAATTGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTCGCTCGCCGAGCTCCAGCCGAAGGAGAAGGGGGGTAAGTAAGGAGGTCTCTGTACCATGGCTCGTACAAAGCAGACTGCCCGCAAATCGACCGGTGGTAAAGCACCCAGGAAGCAACTGGCTACAAAAGCCGCTCGCAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATCGTTACAGgcctGGTACTGTGGCGCTCCGTGAAATTAGACGTTATCAAAAGTCCACTGAACTTCTGATTCGCAAACTTCCCTTCCAGCGTCTGGTGCGAGAAATTGCTCAGGACTTTAAAACAGATCTGCGCTTCCAGAGCGCAGCTATCGGTGCTTTGCAGGAGGCAAGTGAGGCCTATCTGGTTGGCCTTTTTGAAGACACCAACCTGTGTGCTATCCATGCCAAACGTGTAACAATTATGCCAAAAGACATCCAGCTAGCACGCCGCATACGTGGAGAACGTGCTTAAGAATCCACTATGATGGGAAAcatttcattctcaaaaaaaaaaaaaaaaaaaaaattctcttcttcctgttaTTGGTAGTTCTGAACgttagatattttttttccatggggTCAAAAGGTACCTAAGTATATGATTGAGAGTGGAAAAATAGGGGACAGAAATCAGGTATTGgcagtttttccattttcatttgtgtgtgaatttttaatataaatgcgGAGACGTAAAGCATTAATGCAAGTTAAAATGTTTCAGTGAACAAGTTTCAGCGGTTcaactttataataattataaataaacctGTTAAATTTTTCTGGACAATGCcagcatttggatttttttaaaacaagtaaatttCTTATTGACGGCAACTAAATGGTGTTTGTAGCATTTTTATCATACAGTAGATTCCATCCATTCACTATACTTTTCTAACTGAGTTGTCCTACATGCAAGTACATGTTTTTAATGTTGTCTGTCTTCTGTGCTGTTCCTGTAAGTTtgctattaaaatacattaaactatA

Publications

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