Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name LOC101010649P19
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr7:147079618-147080500  UCSC
Strand +
Parental Sequence XM_003893037.4
Parental seq. overlap 605 bp
Parental seq. overlap (%) 53.9%
Genomic Region Intragenic (EIF2AK4)
Retrocopy Summary LOC101010649P19, located on chr7:147079618-147080500, is a retrocopy of the parental gene LOC101010649. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC101010649
Full Name N/A
Also known as H3F3A
Coordinate chr1:135833691-135843193
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes HIST1H3AP28
Bonobo Pan paniscus LOC100970414P20
Gibbon Nomascus leucogenys LOC100599068P13
Crab-eating macaque Macaca fascicularis H3F3AP24
Rhesus Macaca mulatta LOC699443P17
Mouse Mus musculus H3f3aP3
Dog Canis familiaris H3-3AP9
Pale spear-nosed bat Phyllostomus discolor H3F3AP59
Greater horseshoe bat Rhinolophus ferrumequinum H3F3AP5
Human Homo sapiens Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC101010649P19
tCTGGCTACAAAATGCCGCTTGCAAGACTGCATCTTCTACTGGAGGAGTGAAGAAATCTAGCGTTTCAGGCCTGATACTGTGGCATTCCGGGAAATTAGACGTTACCACAAGTACACTGAATTGATTCACAAACTCCCCTTCCAGCATCTGGTGAGAGAAATTGCTCAGGATTTTAAAACCGATCTGTGCTTCCAGAGTGCAGCTATTGGTGCTTTGCAGGAGGCAAGGGAGGCCTATCTGGTTGGCCTTTTTGAAAACACCAATCCGTGTGCTATCTATCCATGCCAAACACGTAACAATTGTGCTGAAAGATATCCAGCTAGCATGACGCACACGTGGAGAGCGAGGTTAAGAATCCAAAATggattgatccactaTGCTTTCATTCTCCCctcaccacccccccccccaaaaaaaattatcttcttattCCTAATAGTTctaaatgttacatatttttttcccatgGGGTCAAAAGGTACCTACATATATGATTGTGAGTGGAAAAAGGGGACAGAAATCACGTATTGGCcgtttttctattttcattcatgtgtgaatttttaatataaatggggGGATGTAAAGCattaatgcaaatcaaaatgtttCAGTGAACAAGTTTCCGCAGTTcaactttataataattatagatAAACCTGTTACATATTTCTGGATAATGCtagtatttggatttttttaaaaacaagtaaatt
>XM_003893037.4
GTGTGTTGGGGGATAGCCTCGGTGTCAGCCATCTTTCAATTGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCTAACGCCAGCGCCGCCTCTCGCTCGCCGAGCTACAGCCGAAGGAGAAGGGGGGTAAGTAAGGAGGTCTCTGTACCATGGCTCGTACAAAGCAGACTGCCCGCAAATCGACCGGTGGTAAAGCACCCAGGAAGCAACTGGCTACAAAAGCCGCTCGCAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATCGTTACAGgcctGGTACTGTGGCACTCCGTGAAATTAGACGTTATCAGAAGTCCACTGAACTTCTGATTCGCAAACTTCCCTTCCAGCGTCTGGTGCGAGAAATTGCTCAGGACTTTAAAACAGATCTGCGCTTCCAGAGCGCAGCTATTGGTGCTTTGCAGGAGGCAAGTGAGGCCTATCTGGTTGGCCTTTTTGAAGACACCAACCTGTGTGCTATCCATGCCAAACGTGTAACAATTATGCCAAAAGACATCCAGCTAGCACGCCGCATACGTGGAGAACGTGCTTAAGAATCCACTATGATGGGAAAcatttcattctcaaaaaaaaaaaaaaaaaaaaaattctcttcttcctgttaTTGGTAGTTCTGAACGttagatattttttttccatggggTCAAAAGGTACCTAAGTATATGATTGCGAGTGGAAAAATAGGGGACAGAAATCAGGTATTggcagtttttccattttcatttgtgtgtgaatttttaatataaatgcagAGGCGTAAAGCATTAATGCAAGTTAAAATGTTTCAGTGAACAAGTTTCAGCGGTTcaactttataataattataaataaacctgTTAAATTTTTCTGGACAATGCcagcatttggatttttttaaaacaagtaaatttCTTATTGACGGCAACTAAATGGTGTTTGTAGCATTTTTATCATACAGTAGATTCCATCCATTCACTATACTTTTCTAACTGAGTTGTCCTACATGCAAGTACATGTTTTTAATGTTGTCTGTCTTCTGTGCTGTTCCTGTAAGTTtgctattaaaatacattaaactatA

Publications

PMID - Link Title