Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name LOC100607920P2
Plot displaying the genomic locations of a retrocopy (in chr13) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr13:39161187-39162522  UCSC
Strand +
Parental Sequence XM_030809441.1
Parental seq. overlap 1091 bp
Parental seq. overlap (%) 33.3%
Genomic Region Intergenic
Retrocopy Summary LOC100607920P2, located on chr13:39161187-39162522, is a retrocopy of the parental gene LOC100607920. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100607920
Full Name N/A
Also known as LOC100607920
Coordinate chr3:71083983-71115040
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes LOC468808P1
Bonobo Pan paniscus ZNF479P5
Gorilla Gorilla gorilla RPL17P50
Orangutan Pongo abelii LOC100446243P4
Crab-eating macaque Macaca fascicularis ZNF195P4
Rhesus Macaca mulatta ZNF195P5
Baboon Papio anubis LOC103880007P3
Golden snub-nosed monkey Rhinopithecus roxellana LOC104669310P8
Human Homo sapiens Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100607920P2
GTGTTCTCATTTTCCTCAACTCCTTTGGCCAGAGCAAGATATAAAGGATTCTTTCCAAAAAAAGATcctgagaagaaatgaaaaatgaggaCATGAGAATTTACAATTAAAGAAAGGCTGTAAAAGTGTGGATGAGTGTAAGGTACACAAAGGACATAATGATTTTAACCAATGTTTAACAACTACCCAGAGTAACATATTTCAGTGTAATAGATATGTAAAAGTCtttcacaaatttttaaattcaaatagccCTAAGATAAGACGTACTAGAAAGAAACCTTTCAAATGCAAAGAATGTGGCAAATCATTTTGCATGCTTTCACAACTAAATCAACATAGGAAAACTCATACTAGAAAGAAGTTCTACGAATGTAAAGTTTGTGGTAAAGGCTTTAACTCGTCCTCAAGCCTTACTAAACATGagagaattcatactggggaGAGGccatacaaatgtgaagaatgtggcaaagcctttaaccagTCCTCAaaccttactaaacataagagaattcatactggagagaaaccctacaaatgtgaagaatgtggcaaagcattTTACCAGCCCTCAGAtcttactaaacataagagaattcatactggggaGAAACCCCACAAATGTGATGAATGTGGAAATACCTTTAACTGGTTCTCAACTTATGCTAGACATAATGTAATTCGTACTGGGAAGAAACCTTATAAATGTCATGAATGTGGCAATGCATTTTACTGGTCCTCAACCCTGACTagacataagagaattcatactggagagaaaccctataaatgtgaagaatgtggcaaagcttttaaccatTTCCCACACCTAACTagacataagataattcatactggagagaaaccctacaaatgtgaagaatgtggcaaagacTTTAGTTTTTTCTCAACTTTTACTGAACATAAAAGAATTCATACtgaagagaaaccctacaaatgtaatgaatgtaGCAAAAGCTTTATGTGGTCCTCAGTTCTTACTAAACATAATAGAATTCATATGGGAGAGAAACCATACAAGTGTGAAAAATGTGACAAATCTTTTAACTGTTCCTCACACCTTACtagacataagaaaattcatactggagagaaactctacaaatgaggaaaatgtggCAAAGTCTTTAGGGCATTCTCAATCTTTACTGAACATAAGGTAATTTATACtgggaaaaaaaaccctacaaatgtgataAATGTGGCCAAGGATTTAACTGGTCCTCAACCTTTactaaacataagataattcatattggagagaaaccttacaatgtgaagaatgtggcaaagcctttaacaaGTCCTCAAT
>XM_030809441.1
TCGGCTTCCGGGCTGTGGTCGGTCCTTTGTCTCTCGCTGCAGCCGGAGGTCAAGGTCTTGTCCTTACTGCTGTGTGTCCTCTGCTCCTAGAGGCCCAGCCTTTGTGGCCCTGTGACCTGCGGGTATTGGGAGATCCACAACTAAGTCGCCAGGACCCCCTGGAAGCCTAGAAATGGGATCATTAACATTTAGGGATGTGGCCATAGAATTATCTCTGGAGGAGTGGCAATGCCTGGACACTGCACAGCagaatttatatagaaatgtgaTGTTAGAGAACTACAGAAACCTGGTCTTCCTGGgtaTTGCTGCCTTTAAGCCAGACCTGATCATTTTTCTGGAACAAGGAAAAGAGCCCTGGAATATGAAGAGACATGAGATGGTGGAAGAACCCCCAGtaatatGTTCTCATTTTGCTCAAGAACTTTGGCCAGAGCAGGGCATAGAAGATTCTTTCCAAACAGTGATATTAAGAAGATatgaaaaatgtagaaatgagaatttacacttaaaaattggtTGTACCAACGTGGATGAGTGTAAGGTGCACAAAGAAGGTTATAATAAACTTAACCAGAGTTTGACAACTACACAGAGCAAAGTATTTCAACGTGGCAAATATGCAAATGTCTTTCATAAATGTTCAAATTCAAACAGACATAAGATAAGGCATACTGGAAAGAAACGTTTGAAATGTAAAGAATATGTCAGATCATTTTGCATGCTTTCACGCCTACCTCAACGTAAAAGAATTTATACTAGAGAGAAttcctacaaatgtgaagaaagtggcaaagcttttaactgGTCCTCAACCCTTACTCATTATAAGAGtactcatactggagagaaaccctacaaatgtaaagaatgtggcaaagcctttagtaAGTTCTCAATCCTTACTAAGCATAaggtaattcatactggagagaagccctacaaatgtgaagaatgtggcaaaaccttTACTAAGGTCTCAACCCTTACTACACATAAGgtaattcatactggagagaaaccctacaaatgcaaagaatgtgggaaagcctatAAGTGGTCCTCAACACTTAGTtatcataagaaaattcatactggagagaaaccctacaaatgtgaagaatgtggcaaagcttttaatcGATCTGCAatccttactaaacataagataattcatactggagagaaaccctacaaatgtgaagaatgtggcaaagcctttagtaAGGTCTCAACCCTTACTACACATAAGGTAATTCATGCTGGAGAGAAGccctacaaatgtaaagaatgtggcaaaggctTTAGTAAGTTCTCAATCCTTACCAAACATAaggtaattcatactggagagaaaccctacaaatgtgaagaatgtggcaaagcctatAAGTGGCCCTCAACCCTTAGTtatcataagaaaattcatactggagagaaaccctacaaatgtgaagaatgtggcaaaggctTTAGTATGTTCTCAATCCTTACTAAACATAaggtaattcatactggagagaaaccctacaaatgtgaagaatgtggcaaagccttcagcTGGTTCTCAGTCTTtagtaaacataagaaaattcatgcTGGAGAGAAATTCTACAAATGTGAAGCATGTGGCAAAGCCTATAAGTCATCCTCAACCCTTAGTtatcataagaaaattcatactggagagaaaccctacaaatgtgaagaatgtggcaaaagcTTTAGTGCATTCTCAATCCTTACTAAACATAAagtaattcatactggagagaaagcctacaaatgtgaagaatgtggcaaagctttcaACTGGTCCTCAAACCTTATGGAACataagataattcatactggagagaaaccctacaaatgtgaagaatgtggcaaagccttcagcTGGCCCTCAAGCCTTACTGAACATAAGGCAATTCatgctggagagaaaccctacaaatgtgaagaatgtggcaaagctttcaACTGGTCCTCAAACCTTATggaacataagagaattcatactggagagaaaccctacaaatgtgaagaatgtggcaaaagcTTTAGTACGTTCTCAATCCTTACTAAACATAaggtaattcatactggagagaaaccctataaatgtgaagaatgtggcaaatccTATAAGTGGTCCTCAACCCTTAGTtatcataagaaaattcatactgtagagaaaccctacaaatgtgaagaatgtggcaaaagcTTTGTTATGTTCTCAATCCTTGCAAAACATAaggtaattcatactggagagaaactctacaaatgtgaagaatgtgggaaagcctatAAGTGGCCCTCAACCCTTAGAtatcataagaaaattcatactggagagaaaccctacaaatgtgaagaatgtggcaaaggctTTAGCATGTTCTCAATCCTTACTAAACATAAGGtagttcatactggagagaaacgctacaaatgtgaagaatgtggcaaagcctttagtaAGGTCTCAACCCTTACTACACATAAGGCAATTCATGCTGGAGAGAAGccctacaaatgtaaagaatgtggcaaaggctTTGGTAAGTTCTCAATCCTTACTAAACATAaggtaattcatactggagagaaaccttacaaatgtgaagaatgtggcaaagcctatAAGTGGCCCTCAACCCTTAGTtatcataagaaaattcatactggagagaaaccctacaaatgtgaagaatgtggaaaaGGCTTTAGTATGTTCTCAATCCTTACTAAACATGAGGTAATTCATACTGgaaagaaaccctacaaatgtgaagaatgtggcaaagccttcagcTGGTTCTCAGTCTTtagtaaacataagaaaattcacactggagagaaactctacaaatgtgaagaatgtggcaaagcctatAAGTGGCCCTCAACCCTTAGTtatcataagaaaattcatctggagagaaaccctacaaatgtgaagaatgtggcaaaacttTTAGTAAGGTCTCAACCCTTACTACACATAAGGCAATTCATGCTGGAGAGAAaacctacaaatgtgaagaatgtggtgAAGCTTTCAACTGGTCCTCAAACCTTATggaacataagagaattcatactggagagacaccctacaaatgtgaagaatgtggcaaaggctTTAGTATGTTCTCAATCCTTACTAAACATAaggtaattcatactggagagaaaccctacaaatgcaaagaatgtgggaaagcctatAAGTGGTCCTCAACCCTTAGTtatcataaga

Publications

PMID - Link Title